branch wip-r created (now b59132b)

[guix-commits]

rekado pushed a change to branch wip-r
in repository guix.

      at b59132b  gnu: r-rhdf5lib: Fix build.

This branch includes the following new commits:

     new 22f590b  gnu: r-ideoviz: Update to 1.26.0.
     new 87e309a  gnu: r-coverageview: Update to 1.28.0.
     new 7b0720d  gnu: r-cummerbund: Update to 2.32.0.
     new d4ba4c7  gnu: r-biocversion: Update to 3.12.0.
     new 17d6693  gnu: r-biocgenerics: Update to 0.36.0.
     new 125eb1c  gnu: r-affycomp: Update to 1.66.0.
     new 8e50c28  gnu: r-affycompatible: Update to 1.50.0.
     new 05d08fb  gnu: r-affycontam: Update to 1.48.0.
     new d92f06f  gnu: r-affycoretools: Update to 1.62.0.
     new a09c6e5  gnu: r-affxparser: Update to 1.62.0.
     new 6c94704  gnu: r-annotate: Update to 1.68.0.
     new 22886cf  gnu: r-hpar: Update to 1.32.0.
     new 1a1ffa1  gnu: r-regioner: Update to 1.22.0.
     new 22e8833  gnu: r-reportingtools: Update to 2.30.0.
     new e91a5a7  gnu: r-geneplotter: Update to 1.68.0.
     new 3c53d34  gnu: r-oligoclasses: Update to 1.52.0.
     new ac7ef4a  gnu: r-oligo: Update to 1.54.0.
     new 7ac374e  gnu: r-qvalue: Update to 2.22.0.
     new b923d78  gnu: r-diffbind: Update to 3.0.0.
     new 52e7552  gnu: r-multtest: Update to 2.46.0.
     new 55f7433  gnu: r-graph: Update to 1.68.0.
     new 2104ca0  gnu: r-chippeakanno: Update to 3.24.0.
     new a884826  gnu: r-marray: Update to 1.68.0.
     new 914e495  gnu: r-cghbase: Update to 1.50.0.
     new d4bc32d  gnu: r-cghcall: Update to 2.52.0.
     new a8ddbab  gnu: r-qdnaseq: Update to 1.26.0.
     new 2fb4809  gnu: r-bayseq: Update to 2.24.0.
     new 69cb4f9  gnu: r-chipcomp: Update to 1.20.0.
     new 5006048  gnu: r-riboprofiling: Update to 1.20.0.
     new 9bbb9db  gnu: r-riboseqr: Update to 1.24.0.
     new 58c5909  gnu: r-interactionset: Update to 1.18.0.
     new 8ab4d27  gnu: r-genomicinteractions: Update to 1.24.0.
     new 13e0c10  gnu: r-ctc: Update to 1.64.0.
     new 066c4e0  gnu: r-goseq: Update to 1.42.0.
     new 4c14809  gnu: r-glimma: Update to 2.0.0.
     new ca4cb87  gnu: r-rots: Update to 1.18.0.
     new 35955cd  gnu: r-plgem: Update to 1.62.0.
     new ff4ac11  gnu: r-inspect: Update to 1.20.0.
     new 4e3ef8b  gnu: r-dnabarcodes: Update to 1.20.0.
     new 281a4f0  gnu: r-ruvseq: Update to 1.24.0.
     new fc5e744  gnu: r-biocneighbors: Update to 1.8.0.
     new f21a698  gnu: r-biocsingular: Update to 1.6.0.
     new 56b3275  gnu: r-destiny: Update to 3.4.0.
     new 9baeb7e  gnu: r-savr: Update to 1.28.0.
     new 58845b6  gnu: r-chipexoqual: Update to 1.14.0.
     new 08540b6  gnu: r-copynumber: Update to 1.30.0.
     new ed2105c  gnu: r-dnacopy: Update to 1.64.0.
     new 1970fb5  gnu: r-ebseq: Update to 1.30.0.
     new 54b15ec  gnu: r-karyoploter: Update to 1.16.0.
     new 23a26c2  gnu: r-lpsymphony: Update to 1.18.0.
     new 18ff80e  gnu: r-ihw: Update to 1.18.0.
     new 8aa2aee  gnu: r-icobra: Update to 1.18.0.
     new d6e0864  gnu: r-mast: Update to 1.16.0.
     new d382a70  gnu: r-monocle: Update to 2.18.0.
     new 55eb9e8  gnu: r-noiseq: Update to 2.34.0.
     new e32140d  gnu: r-scdd: Update to 1.14.0.
     new e693fd7  gnu: r-scone: Update to 1.14.0.
     new e48545e  gnu: r-geoquery: Update to 2.58.0.
     new 7b69566  gnu: r-illuminaio: Update to 0.32.0.
     new 598559e  gnu: r-siggenes: Update to 1.64.0.
     new b504a92  gnu: r-bumphunter: Update to 1.32.0.
     new 1212136  gnu: r-minfi: Update to 1.36.0.
     new 8accbcf  gnu: r-methylumi: Update to 2.36.0.
     new 05b7fd4  gnu: r-lumi: Update to 2.42.0.
     new d2447c5  gnu: r-linnorm: Update to 2.14.0.
     new 72a07f4  gnu: r-ioniser: Update to 2.14.0.
     new d16c757  gnu: r-varianttools: Update to 1.32.0.
     new 985eb84  gnu: r-heatplus: Update to 2.36.0.
     new f75ba69  gnu: r-gosemsim: Update to 2.16.0.
     new 1f09016  gnu: r-anota: Update to 1.38.0.
     new 9667c04  gnu: r-sigpathway: Update to 1.58.0.
     new 8435d5d  gnu: r-fgsea: Update to 1.16.0.
     new da543c9  gnu: r-dose: Update to 3.16.0.
     new 3b693f3  gnu: r-enrichplot: Update to 1.10.0.
     new 1f14773  gnu: r-clusterprofiler: Update to 3.18.0.
     new 7360fdc  gnu: r-mlinterfaces: Update to 1.70.0.
     new 9b8c97a  gnu: r-a4core: Update to 1.38.0.
     new 9ba27ff  gnu: r-a4classif: Update to 1.38.0.
     new 8a8a391  gnu: r-a4preproc: Update to 1.38.0.
     new c915397  gnu: r-a4reporting: Update to 1.38.0.
     new 56b8807  gnu: r-a4base: Update to 1.38.0.
     new 9c87647  gnu: r-a4: Update to 1.38.0.
     new 0ced620  gnu: r-abseqr: Update to 1.8.0.
     new e8e9a7a  gnu: r-bacon: Update to 1.18.0.
     new d081e4a  gnu: r-rgadem: Update to 2.38.0.
     new 0b5e70d  gnu: r-motifdb: Update to 1.32.0.
     new b5a70a7  gnu: r-motifbreakr: Update to 2.4.0.
     new cd647f2  gnu: r-motifstack: Update to 1.34.0.
     new 66040a8  gnu: r-genomicscores: Update to 2.2.0.
     new a2e0aef  gnu: r-atacseqqc: Update to 1.14.0.
     new d0a4d0c  gnu: r-gofuncr: Update to 1.10.0.
     new 05cd311  gnu: r-abaenrichment: Update to 1.20.0.
     new 3cd7b31  gnu: r-annotationfuncs: Update to 1.40.0.
     new af854d4  gnu: r-annotationtools: Update to 1.64.0.
     new 99c6b72  gnu: r-allelicimbalance: Update to 1.28.0.
     new b5278cc  gnu: r-aucell: Update to 1.12.0.
     new bd5ce43  gnu: r-ebimage: Update to 4.32.0.
     new 5706b8e  gnu: r-yamss: Update to 1.16.0.
     new 0f19ae3  gnu: r-gtrellis: Update to 1.22.0.
     new ea5fbf3  gnu: r-somaticsignatures: Update to 2.26.0.
     new 7c2af4e  gnu: r-yapsa: Update to 1.16.0.
     new b3767c5  gnu: r-gcrma: Update to 2.62.0.
     new cb66fd4  gnu: r-simpleaffy: Update to 2.66.0.
     new f61a03e  gnu: r-yaqcaffy: Update to 1.50.0.
     new 3453d01  gnu: r-quantro: Update to 1.24.0.
     new 786de33  gnu: r-yarn: Update to 1.16.0.
     new fa202de  gnu: r-roar: Update to 1.26.0.
     new 504ee42  gnu: r-xbseq: Update to 1.22.0.
     new 0e82bb2  gnu: r-massspecwavelet: Update to 1.56.0.
     new f6e6528  gnu: r-xcms: Update to 3.12.0.
     new 4776af9  gnu: r-wrench: Update to 1.8.0.
     new 3cbd929  gnu: r-wiggleplotr: Update to 1.14.0.
     new 6c283ae  gnu: r-widgettools: Update to 1.68.0.
     new d19cf08  gnu: r-webbioc: Update to 1.62.0.
     new 8683be2  gnu: r-zfpkm: Update to 1.12.0.
     new a84dce1  gnu: r-rbowtie2: Update to 1.12.0.
     new 4bf6181  gnu: r-progeny: Update to 1.12.0.
     new b8039a1  gnu: r-arrmnormalization: Update to 1.30.0.
     new 239d11d  gnu: r-biocfilecache: Update to 1.14.0.
     new 69775ed  gnu: r-iclusterplus: Update to 1.26.0.
     new e9ac5c2  gnu: r-rbowtie: Update to 1.30.0.
     new a9c1cb2  gnu: r-sgseq: Update to 1.24.0.
     new 91e1801  gnu: r-rhisat2: Update to 1.6.0.
     new 4cb0f0d  gnu: r-quasr: Update to 1.30.0.
     new 689828a  gnu: r-rqc: Update to 1.24.0.
     new 1e45393  gnu: r-birewire: Update to 3.22.0.
     new 445e4cd  gnu: r-multidataset: Update to 1.18.0.
     new f774ad4  gnu: r-ropls: Update to 1.22.0.
     new f0f40a5  gnu: r-biosigner: Update to 1.18.0.
     new 3688b43  gnu: r-annotatr: Update to 1.16.0.
     new b06c4bc  gnu: r-rsubread: Update to 2.4.0.
     new 27b94d2  gnu: r-flowutils: Update to 1.54.0.
     new 6bc5462  gnu: r-consensusclusterplus: Update to 1.54.0.
     new 4c02f52  gnu: r-cytolib: Update to 2.2.0.
     new 30e7860  gnu: r-flowcore: Update to 2.2.0.
     new 4da49e8  gnu: r-flowmeans: Update to 1.50.0.
     new ba31be3  gnu: r-ncdfflow: Update to 2.36.0.
     new ee41814  gnu: r-ggcyto: Update to 1.18.0.
     new fe36443  gnu: r-flowviz: Update to 1.54.0.
     new 5d42d9d  gnu: r-flowclust: Update to 3.28.0.
     new ff8c1be  gnu: r-rprotobuflib: Update to 2.2.0.
     new 097f772  gnu: r-flowworkspace: Update to 4.2.0.
     new 51b44d7  gnu: r-flowstats: Update to 4.2.0.
     new 6a6863b  gnu: r-opencyto: Update to 2.2.0.
     new fe44af6  gnu: r-cytoml: Update to 2.2.0.
     new cc79e1c  gnu: r-flowsom: Update to 1.22.0.
     new ac4c44c  gnu: r-mixomics: Update to 6.14.0.
     new 8d950dc  gnu: r-depecher: Update to 1.6.0.
     new 26083d4  gnu: r-rcistarget: Update to 1.10.0.
     new 1972dc8  gnu: r-cicero: Update to 1.8.0.
     new 1f9d91f  gnu: r-genie3: Update to 1.12.0.
     new 48809dc  gnu: r-roc: Update to 1.66.0.
     new c60c50b  gnu: r-watermelon: Update to 1.34.0.
     new e518ca9  gnu: r-gdsfmt: Update to 1.26.0.
     new 2012edc  gnu: r-bigmelon: Update to 1.16.0.
     new 0acdebf  gnu: r-seqbias: Update to 1.38.0.
     new b672f21  gnu: r-reqon: Update to 1.36.0.
     new a08109b  gnu: r-wavcluster: Update to 2.24.0.
     new 53f9ee1  gnu: r-timeseriesexperiment: Update to 1.8.0.
     new aa1b7a7  gnu: r-variantfiltering: Update to 1.26.0.
     new 97e93a4  gnu: r-variancepartition: Update to 1.20.0.
     new 36c668a  gnu: r-htqpcr: Update to 1.44.0.
     new 88b00ec  gnu: r-unifiedwmwqpcr: Update to 1.26.0.
     new b7d4ff0  gnu: r-bgmix: Update to 1.50.0.
     new e156317  gnu: r-bgx: Update to 1.56.0.
     new 44e33d7  gnu: r-bhc: Update to 1.42.0.
     new 7ca5d7b  gnu: r-bicare: Update to 1.48.0.
     new c06720a  gnu: r-bifet: Update to 1.10.0.
     new 8424c6e  gnu: r-rsbml: Update to 2.48.0.
     new 5ddc820  gnu: r-hypergraph: Update to 1.62.0.
     new fdc94a8  gnu: r-hyperdraw: Update to 1.42.0.
     new 714cb9b  gnu: r-biggr: Update to 1.26.0.
     new 0a8b1a6  gnu: r-bigmemoryextras: Update to 1.38.0.
     new 2a39479  gnu: r-bigpint: Update to 1.6.0.
     new 354d73c  gnu: r-chemminer: Update to 3.42.0.
     new 15a2fd6  gnu: r-bioassayr: Update to 1.28.0.
     new 2edcc1b  gnu: r-biobroom: Update to 1.22.0.
     new c2146a1  gnu: r-graphite: Update to 1.36.0.
     new e9b0c1c  gnu: r-reactomepa: Update to 1.34.0.
     new e1243c7  gnu: r-ebarrays: Update to 2.54.0.
     new 69c9056  gnu: r-bioccasestudies: Update to 1.52.0.
     new 3b38d1a  gnu: r-biocgraph: Update to 1.52.0.
     new 1a15692  gnu: r-experimenthub: Update to 1.16.0.
     new e939444  gnu: r-multiassayexperiment: Update to 1.16.0.
     new 2133577  gnu: r-bioconcotk: Update to 1.10.0.
     new bf7f6aa  gnu: r-biocor: Update to 1.14.0.
     new 5f324d6  gnu: r-biocpkgtools: Update to 1.8.0.
     new a02e3ff  gnu: r-biocset: Update to 1.4.0.
     new d51d7e4  gnu: r-biocworkflowtools: Update to 1.16.0.
     new c991c81  gnu: r-biodist: Update to 1.62.0.
     new b45d808  gnu: r-pcatools: Update to 2.2.0.
     new 5c36aed  gnu: r-rgreat: Update to 1.22.0.
     new c5d174e  gnu: r-m3c: Update to 1.12.0.
     new 6d9a6a0  gnu: r-icens: Update to 1.62.0.
     new 966b87a  gnu: r-fourcseq: Update to 1.24.0.
     new f862207  gnu: r-preprocesscore: Update to 1.52.0.
     new e3bf943  gnu: r-rgraphviz: Update to 2.34.0.
     new 7f0676a  gnu: r-fithic: Update to 1.16.0.
     new 240f4c6  gnu: r-hitc: Update to 1.34.0.
     new b28b363  gnu: r-hdf5array: Update to 1.18.0.
     new 17067d9  gnu: r-rhdf5lib: Update to 1.12.0.
     new 017c2cd  gnu: r-beachmat: Update to 2.6.0.
     new 1122eb3  gnu: r-singlecellexperiment: Update to 1.12.0.
     new e15e962  gnu: r-scater: Update to 1.18.0.
     new cae779b  gnu: r-scran: Update to 1.18.0.
     new a571e95  gnu: r-delayedmatrixstats: Update to 1.12.0.
     new 73f988a  gnu: r-genefilter: Update to 1.72.0.
     new 1b4b45a  gnu: r-deseq2: Update to 1.30.0.
     new 51fc963  gnu: r-dexseq: Update to 1.36.0.
     new b6f86a4  gnu: r-annotationforge: Update to 1.32.0.
     new a1f2cac  gnu: r-rbgl: Update to 1.66.0.
     new 1966bc6  gnu: r-gseabase: Update to 1.52.0.
     new f810926  gnu: r-category: Update to 2.56.0.
     new 4087086  gnu: r-gostats: Update to 2.56.0.
     new e3b8110  gnu: r-shortread: Update to 1.48.0.
     new f6462f0  gnu: r-systempiper: Update to 1.24.0.
     new 3801ddf  gnu: r-grohmm: Update to 1.24.0.
     new 7fce807  gnu: r-biocviews: Update to 1.58.0.
     new 8dbc7ad  gnu: r-biocstyle: Update to 2.18.0.
     new a5fc586  gnu: r-bioccheck: Update to 1.26.0.
     new b4df91f  gnu: r-s4vectors: Update to 0.28.0.
     new 0a44c1b  gnu: r-iranges: Update to 2.24.0.
     new 75ca0e0  gnu: r-genomeinfodb: Update to 1.26.0.
     new b9da0f0  gnu: r-edger: Update to 3.32.0.
     new 35c6f86  gnu: r-variantannotation: Update to 1.36.0.
     new ce44bbb  gnu: r-limma: Update to 3.46.0.
     new 2ddd058  gnu: r-xvector: Update to 0.30.0.
     new a90e2db  gnu: r-genomicranges: Update to 1.42.0.
     new 9b5bac7  gnu: r-biobase: Update to 2.50.0.
     new bfbd6c7  gnu: r-annotationdbi: Update to 1.52.0.
     new 7ad9de8  gnu: r-biomart: Update to 2.46.0.
     new 1376331  gnu: r-biocparallel: Update to 1.24.0.
     new bcf2c68  gnu: r-biostrings: Update to 2.58.0.
     new 069da8a  gnu: r-rsamtools: Update to 2.6.0.
     new 101a052  gnu: r-delayedarray: Update to 0.16.0.
     new 3584e30  gnu: r-summarizedexperiment: Update to 1.20.0.
     new 7b88d26  gnu: r-genomicalignments: Update to 1.26.0.
     new 64e001d  gnu: r-rtracklayer: Update to 1.50.0.
     new 9520de9  gnu: r-genomicfeatures: Update to 1.42.0.
     new 703fa87  gnu: r-topgo: Update to 2.41.0.
     new 5c28e29  gnu: r-bsgenome: Update to 1.58.0.
     new f534e27  gnu: r-impute: Update to 1.64.0.
     new 836d355  gnu: r-seqpattern: Update to 1.22.0.
     new f9765b9  gnu: r-genomation: Update to 1.22.0.
     new 2b3f25a  gnu: r-seqlogo: Update to 1.56.0.
     new 347e27a  gnu: r-zlibbioc: Update to 1.36.0.
     new 76a1b07  gnu: r-rhtslib: Update to 1.22.0.
     new 6bb7265  gnu: r-bamsignals: Update to 1.22.0.
     new 395b05e  gnu: r-rcas: Update to 1.16.0.
     new 1a6ff05  gnu: r-mutationalpatterns: Update to 3.0.0.
     new ae5416b  gnu: r-tximport: Update to 1.18.0.
     new 185b7c1  gnu: r-rhdf5: Update to 2.34.0.
     new b814d93  gnu: r-annotationfilter: Update to 1.14.0.
     new fc4333b  gnu: r-chipseq: Update to 1.40.0.
     new 555f8f7  gnu: r-copywriter: Update to 2.22.0.
     new ae10b4b  gnu: r-methylkit: Update to 1.16.0.
     new 0f7c6f7  gnu: r-sva: Update to 3.38.0.
     new a418944  gnu: r-protgenerics: Update to 1.22.0.
     new 873ff3e  gnu: r-mzr: Update to 2.24.0.
     new f9002a7  gnu: r-affyio: Update to 1.60.0.
     new 4f5984c  gnu: r-affy: Update to 1.68.0.
     new c6a596e  gnu: r-vsn: Update to 3.58.0.
     new b9d8756e gnu: r-mzid: Update to 1.28.0.
     new af6a889  gnu: r-pcamethods: Update to 1.82.0.
     new b089e06  gnu: r-msnbase: Update to 2.16.0.
     new 2392560  gnu: r-msnid: Update to 1.24.0.
     new dd7a13f  gnu: r-aroma-light: Update to 3.20.0.
     new cafe885  gnu: r-edaseq: Update to 2.24.0.
     new 4797f0a  gnu: r-interactivedisplaybase: Update to 1.28.0.
     new ffcfc6e  gnu: r-annotationhub: Update to 2.22.0.
     new 681f907  gnu: r-fastseg: Update to 1.36.0.
     new ffb7408  gnu: r-keggrest: Update to 1.30.0.
     new fb42c9b  gnu: r-gage: Update to 2.40.0.
     new 5e6e17d  gnu: r-genomicfiles: Update to 1.26.0.
     new 5ce79b3  gnu: r-complexheatmap: Update to 2.6.0.
     new 251ca21  gnu: r-dirichletmultinomial: Update to 1.32.0.
     new bad24a9  gnu: r-ensembldb: Update to 2.14.0.
     new 1a83df8  gnu: r-organismdbi: Update to 1.32.0.
     new f8c71fc  gnu: r-biovizbase: Update to 1.38.0.
     new a680e62  gnu: r-ggbio: Update to 1.38.0.
     new ce1f575  gnu: r-gqtlbase: Update to 1.21.1.
     new 5ed64e0  gnu: r-snpstats: Update to 1.40.0.
     new 19b7f8e  gnu: r-erma: Update to 1.6.0.
     new ee1e927  gnu: r-ldblock: Update to 1.20.0.
     new f0d9d65  gnu: r-gqtlstats: Update to 1.21.3.
     new c072572  gnu: r-gviz: Update to 1.34.0.
     new 16b7c25  gnu: r-gwascat: Update to 2.22.0.
     new 768db7e  gnu: r-sushi: Update to 1.28.0.
     new ac6a55e  import: cran: Update the Bioconductor version to 3.12.
     new 61ed9bc  gnu: Add r-ggalluvial.
     new 8ba1957  gnu: Add r-matrixgenerics.
     new 98dbc4b  gnu: r-delayedarray: Fix build.
     new 7495d15  gnu: r-systempiper: Update to 1.24.2.
     new 7781798  gnu: r-hpar: Update to 1.32.1.
     new fb3486e  gnu: r-biocparallel: Update to 1.24.1.
     new de36067  gnu: r-genomicfeatures: Update to 1.42.1.
     new 0b47dd0  gnu: r-topgo: Update to 2.42.0.
     new 18fca4e  gnu: r-mutationalpatterns: Update to 3.0.1.
     new 58e2a91  gnu: r-complexheatmap: Update to 2.6.2.
     new d9487ec  gnu: r-oligo: Update to 1.54.1.
     new 32b2417  gnu: Add r-rcppnumerical.
     new 427aa96  gnu: Add r-apeglm.
     new c12097b  gnu: Add r-etrunct.
     new b47deb6  gnu: Add r-invgamma.
     new 9cb4971  gnu: Add r-mixsqp.
     new 3702391  gnu: Add r-ashr.
     new 46622f8  gnu: Add r-greylistchip.
     new 7275155  gnu: r-diffbind: Update to 3.0.6.
     new 23d74f5  gnu: r-chippeakanno: Update to 3.24.1.
     new af964e5  gnu: r-biocneighbors: Update to 1.8.1.
     new 6c4558d  gnu: r-gosemsim: Update to 2.16.1.
     new 3a0e5b9  gnu: Add r-shadowtext.
     new 4d9a899  gnu: r-enrichplot: Update to 1.10.1.
     new de7d336  gnu: r-annaffy: Update to 1.62.0.
     new e57bf84  gnu: r-rsubread: Update to 2.4.1.
     new 9599ff9  gnu: r-beachmat: Update to 2.6.1.
     new d579f80  gnu: Add r-bluster.
     new b59132b  gnu: r-rhdf5lib: Fix build.

The 318 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails.  The revisions
listed as "add" were already present in the repository and have only
been added to this reference.