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215/318: gnu: r-shortread: Update to 1.48.0.
From: |
guix-commits |
Subject: |
215/318: gnu: r-shortread: Update to 1.48.0. |
Date: |
Fri, 20 Nov 2020 08:40:44 -0500 (EST) |
rekado pushed a commit to branch wip-r
in repository guix.
commit e3b811068f138c050847aeae1e96eb7523f7f952
Author: zimoun <zimon.toutoune@gmail.com>
AuthorDate: Fri Oct 30 15:58:01 2020 +0100
gnu: r-shortread: Update to 1.48.0.
* gnu/packages/bioinformatics.scm (r-shortread): Update to 1.48.0.
---
gnu/packages/bioinformatics.scm | 5 +++--
1 file changed, 3 insertions(+), 2 deletions(-)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 31a292f..f99321b 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -7264,14 +7264,14 @@ testing and other simple calculations.")
(define-public r-shortread
(package
(name "r-shortread")
- (version "1.46.0")
+ (version "1.48.0")
(source
(origin
(method url-fetch)
(uri (bioconductor-uri "ShortRead" version))
(sha256
(base32
- "0l4kdln69y6yhln0xiv2jmpxg05fjcglln406p43a2bqvk2lr03d"))))
+ "0w4m8d3h660mmr2ymp206r1n4aqssxmkv8yxkbr5y1swrahxzfk9"))))
(properties `((upstream-name . "ShortRead")))
(build-system r-build-system)
(inputs
@@ -7284,6 +7284,7 @@ testing and other simple calculations.")
("r-genomeinfodb" ,r-genomeinfodb)
("r-genomicalignments" ,r-genomicalignments)
("r-genomicranges" ,r-genomicranges)
+ ("r-rhtslib" ,r-rhtslib)
("r-hwriter" ,r-hwriter)
("r-iranges" ,r-iranges)
("r-lattice" ,r-lattice)
- 190/318: gnu: r-biodist: Update to 1.62.0., (continued)
- 190/318: gnu: r-biodist: Update to 1.62.0., guix-commits, 2020/11/20
- 194/318: gnu: r-icens: Update to 1.62.0., guix-commits, 2020/11/20
- 198/318: gnu: r-fithic: Update to 1.16.0., guix-commits, 2020/11/20
- 196/318: gnu: r-preprocesscore: Update to 1.52.0., guix-commits, 2020/11/20
- 203/318: gnu: r-singlecellexperiment: Update to 1.12.0., guix-commits, 2020/11/20
- 206/318: gnu: r-delayedmatrixstats: Update to 1.12.0., guix-commits, 2020/11/20
- 207/318: gnu: r-genefilter: Update to 1.72.0., guix-commits, 2020/11/20
- 209/318: gnu: r-dexseq: Update to 1.36.0., guix-commits, 2020/11/20
- 212/318: gnu: r-gseabase: Update to 1.52.0., guix-commits, 2020/11/20
- 213/318: gnu: r-category: Update to 2.56.0., guix-commits, 2020/11/20
- 215/318: gnu: r-shortread: Update to 1.48.0.,
guix-commits <=
- 222/318: gnu: r-iranges: Update to 2.24.0., guix-commits, 2020/11/20
- 226/318: gnu: r-limma: Update to 3.46.0., guix-commits, 2020/11/20
- 229/318: gnu: r-biobase: Update to 2.50.0., guix-commits, 2020/11/20
- 237/318: gnu: r-genomicalignments: Update to 1.26.0., guix-commits, 2020/11/20
- 236/318: gnu: r-summarizedexperiment: Update to 1.20.0., guix-commits, 2020/11/20
- 235/318: gnu: r-delayedarray: Update to 0.16.0., guix-commits, 2020/11/20
- 238/318: gnu: r-rtracklayer: Update to 1.50.0., guix-commits, 2020/11/20
- 240/318: gnu: r-topgo: Update to 2.41.0., guix-commits, 2020/11/20
- 249/318: gnu: r-rcas: Update to 1.16.0., guix-commits, 2020/11/20
- 242/318: gnu: r-impute: Update to 1.64.0., guix-commits, 2020/11/20