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branch master updated: gnu: r-ldheatmap: Fix missing variable.


From: guix-commits
Subject: branch master updated: gnu: r-ldheatmap: Fix missing variable.
Date: Tue, 29 Dec 2020 13:03:28 -0500

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mothacehe pushed a commit to branch master
in repository guix.

The following commit(s) were added to refs/heads/master by this push:
     new 0c8bb20  gnu: r-ldheatmap: Fix missing variable.
0c8bb20 is described below

commit 0c8bb20b7cbd39537999fce29979a6acaf64e601
Author: Mathieu Othacehe <othacehe@gnu.org>
AuthorDate: Tue Dec 29 19:00:39 2020 +0100

    gnu: r-ldheatmap: Fix missing variable.
    
    This is a follow-up of 61ec8928c7fee048fea37558508eb0a80022684b.
    
    * gnu/packages/cran.scm (r-ldheatmap)[propagated-inputs]: Use 'module-ref' 
to
    resolve r-snpstats variable which is located in (gnu package bioinformatics)
    that cannot be included due to a circular dependency.
---
 gnu/packages/cran.scm | 4 +++-
 1 file changed, 3 insertions(+), 1 deletion(-)

diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index 10212e2..c0926d9 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -14734,7 +14734,9 @@ inbred lines, F2 intercrosses, and association mapping 
populations.")
     (propagated-inputs
      `(("r-genetics" ,r-genetics)
        ("r-rcpp" ,r-rcpp)
-       ("r-snpstats" ,r-snpstats)))
+       ("r-snpstats" ,(module-ref
+                       (resolve-interface '(gnu packages bioconductor))
+                       'r-snpstats))))
     (home-page "https://stat.sfu.ca/statgen/research/ldheatmap.html";)
     (synopsis "Graphical display of pairwise linkage disequilibria between 
SNPs")
     (description



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