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22/163: gnu: python-scanpy: Do not set PYTHONPATH.


From: guix-commits
Subject: 22/163: gnu: python-scanpy: Do not set PYTHONPATH.
Date: Mon, 25 Jan 2021 02:01:20 -0500 (EST)

apteryx pushed a commit to branch cu/farewell-to-pythonpath
in repository guix.

commit f378e13135ae74b01048f955d633408ce0d580e1
Author: Maxim Cournoyer <maxim.cournoyer@gmail.com>
AuthorDate: Fri Jan 22 16:25:56 2021 -0500

    gnu: python-scanpy: Do not set PYTHONPATH.
    
    * gnu/packages/bioinformatics.scm (python-scanpy)[phases]
    {check}: Do not set PYTHONPATH.
---
 gnu/packages/bioinformatics.scm | 6 +-----
 1 file changed, 1 insertion(+), 5 deletions(-)

diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 043f97f..720d32d 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -12932,11 +12932,7 @@ in RNA-seq data.")
              (delete-file "scanpy/tests/test_preprocessing.py")
              (delete-file "scanpy/tests/test_read_10x.py")
 
-             (setenv "PYTHONPATH"
-                     (string-append (getcwd) ":"
-                                    (getenv "PYTHONPATH")))
-             (invoke "pytest")
-             #t)))))
+             (invoke "pytest"))))))
     (propagated-inputs
      `(("python-anndata" ,python-anndata)
        ("python-h5py" ,python-h5py)



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