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02/06: gnu: Add trf.
From: |
guix-commits |
Subject: |
02/06: gnu: Add trf. |
Date: |
Thu, 28 Jan 2021 09:09:23 -0500 (EST) |
rekado pushed a commit to branch master
in repository guix.
commit 6d3cafa086b380b371d093906390ad610170ff2b
Author: Ricardo Wurmus <rekado@elephly.net>
AuthorDate: Mon Jan 25 15:34:23 2021 +0100
gnu: Add trf.
* gnu/packages/bioinformatics.scm (trf): New variable.
---
gnu/packages/bioinformatics.scm | 24 ++++++++++++++++++++++++
1 file changed, 24 insertions(+)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 8514306..1aa60a0 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -2822,6 +2822,30 @@ sequencing data. It uses paired-ends and split-reads to
sensitively and
accurately delineate genomic rearrangements throughout the genome.")
(license license:gpl3+)))
+(define-public trf
+ (package
+ (name "trf")
+ (version "4.09.1")
+ (source (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/Benson-Genomics-Lab/TRF")
+ (commit (string-append "v" version))))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32
"0fhwr4s1mf8nw8fr5imwjvjr42b59p97zr961ifm8xl1bajz4wpg"))))
+ (build-system gnu-build-system)
+ (home-page "https://github.com/Benson-Genomics-Lab/TRF")
+ (synopsis "Tandem Repeats Finder: a program to analyze DNA sequences")
+ (description "A tandem repeat in DNA is two or more adjacent, approximate
+copies of a pattern of nucleotides. Tandem Repeats Finder is a program to
+locate and display tandem repeats in DNA sequences. In order to use the
+program, the user submits a sequence in FASTA format. The output consists of
+two files: a repeat table file and an alignment file. Submitted sequences may
+be of arbitrary length. Repeats with pattern size in the range from 1 to 2000
+bases are detected.")
+ (license license:agpl3+)))
+
(define-public diamond
(package
(name "diamond")
- branch master updated (b9650f7 -> 95852b3), guix-commits, 2021/01/28
- 02/06: gnu: Add trf.,
guix-commits <=
- 03/06: guix: Add Open Software License 2.1., guix-commits, 2021/01/28
- 01/06: guix: Fix typo., guix-commits, 2021/01/28
- 06/06: ui: Look up extensions before built-in commands., guix-commits, 2021/01/28
- 04/06: gnu: Add perl-text-soundex., guix-commits, 2021/01/28
- 05/06: gnu: Add repeat-masker., guix-commits, 2021/01/28