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branch master updated: gnu: Add r-tfbstools.
From: |
guix-commits |
Subject: |
branch master updated: gnu: Add r-tfbstools. |
Date: |
Thu, 18 Feb 2021 09:35:58 -0500 |
This is an automated email from the git hooks/post-receive script.
rekado pushed a commit to branch master
in repository guix.
The following commit(s) were added to refs/heads/master by this push:
new 2def2e2 gnu: Add r-tfbstools.
2def2e2 is described below
commit 2def2e203f51fd6448267d87085a3ab95663c7a8
Author: Ricardo Wurmus <rekado@elephly.net>
AuthorDate: Thu Feb 18 15:35:38 2021 +0100
gnu: Add r-tfbstools.
* gnu/packages/bioconductor.scm (r-tfbstools): New variable.
---
gnu/packages/bioconductor.scm | 46 +++++++++++++++++++++++++++++++++++++++++++
1 file changed, 46 insertions(+)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 38a3491..4e8b928 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -8926,6 +8926,52 @@ advanced visualization of sets of conserved noncoding
elements.")
(license:non-copyleft
"https://raw.githubusercontent.com/ucscGenomeBrowser/kent/v410_base/src/lib/LICENSE")))))
+(define-public r-tfbstools
+ (package
+ (name "r-tfbstools")
+ (version "1.28.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "TFBSTools" version))
+ (sha256
+ (base32
+ "0p42hnwhipmcvrsqk3s8qfiian1fvh6izfd9m961bsx99r2clnha"))))
+ (properties `((upstream-name . "TFBSTools")))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-biobase" ,r-biobase)
+ ("r-biocgenerics" ,r-biocgenerics)
+ ("r-biocparallel" ,r-biocparallel)
+ ("r-biostrings" ,r-biostrings)
+ ("r-bsgenome" ,r-bsgenome)
+ ("r-catools" ,r-catools)
+ ("r-cner" ,r-cner)
+ ("r-dbi" ,r-dbi)
+ ("r-dirichletmultinomial" ,r-dirichletmultinomial)
+ ("r-genomeinfodb" ,r-genomeinfodb)
+ ("r-genomicranges" ,r-genomicranges)
+ ("r-gtools" ,r-gtools)
+ ("r-iranges" ,r-iranges)
+ ("r-rsqlite" ,r-rsqlite)
+ ("r-rtracklayer" ,r-rtracklayer)
+ ("r-s4vectors" ,r-s4vectors)
+ ("r-seqlogo" ,r-seqlogo)
+ ("r-tfmpvalue" ,r-tfmpvalue)
+ ("r-xml" ,r-xml)
+ ("r-xvector" ,r-xvector)))
+ (native-inputs `(("r-knitr" ,r-knitr)))
+ (home-page "https://github.com/ge11232002/TFBSTools")
+ (synopsis "Transcription factor binding site (TFBS) analysis")
+ (description
+ "TFBSTools is a package for the analysis and manipulation of
+transcription factor binding sites. It includes matrices conversion
+between @dfn{Position Frequency Matrix} (PFM), @dfn{Position Weight
+Matrix} (PWM) and @dfn{Information Content Matrix} (ICM). It can also
+scan putative TFBS from sequence/alignment, query JASPAR database and
+provides a wrapper of de novo motif discovery software.")
+ (license license:gpl2)))
+
(define-public r-singlecellexperiment
(package
(name "r-singlecellexperiment")
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