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branch master updated: gnu: Add r-motifmatchr.
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guix-commits |
Subject: |
branch master updated: gnu: Add r-motifmatchr. |
Date: |
Thu, 18 Feb 2021 09:41:09 -0500 |
This is an automated email from the git hooks/post-receive script.
rekado pushed a commit to branch master
in repository guix.
The following commit(s) were added to refs/heads/master by this push:
new 9a38f39 gnu: Add r-motifmatchr.
9a38f39 is described below
commit 9a38f39ec0b51864b126fc48218c3e27ca6d98eb
Author: Ricardo Wurmus <rekado@elephly.net>
AuthorDate: Thu Feb 18 15:40:44 2021 +0100
gnu: Add r-motifmatchr.
* gnu/packages/bioconductor.scm (r-motifmatchr): New variable.
---
gnu/packages/bioconductor.scm | 34 ++++++++++++++++++++++++++++++++++
1 file changed, 34 insertions(+)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 4e8b928..a98971e 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -8972,6 +8972,40 @@ scan putative TFBS from sequence/alignment, query JASPAR
database and
provides a wrapper of de novo motif discovery software.")
(license license:gpl2)))
+(define-public r-motifmatchr
+ (package
+ (name "r-motifmatchr")
+ (version "1.12.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "motifmatchr" version))
+ (sha256
+ (base32
+ "0zrpn0hqdg0hm80ydkfpiqncwyb8y0xp6mlin7g955p8zcpcm67z"))))
+ (properties `((upstream-name . "motifmatchr")))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-biostrings" ,r-biostrings)
+ ("r-bsgenome" ,r-bsgenome)
+ ("r-genomeinfodb" ,r-genomeinfodb)
+ ("r-genomicranges" ,r-genomicranges)
+ ("r-iranges" ,r-iranges)
+ ("r-matrix" ,r-matrix)
+ ("r-rcpp" ,r-rcpp)
+ ("r-rcpparmadillo" ,r-rcpparmadillo)
+ ("r-rsamtools" ,r-rsamtools)
+ ("r-s4vectors" ,r-s4vectors)
+ ("r-summarizedexperiment" ,r-summarizedexperiment)
+ ("r-tfbstools" ,r-tfbstools)))
+ (native-inputs `(("r-knitr" ,r-knitr)))
+ (home-page "https://bioconductor.org/packages/motifmatchr")
+ (synopsis "Fast motif matching in R")
+ (description
+ "Quickly find motif matches for many motifs and many sequences.
+This package wraps C++ code from the MOODS motif calling library.")
+ (license license:gpl3)))
+
(define-public r-singlecellexperiment
(package
(name "r-singlecellexperiment")
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