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01/04: gnu: Add ngshmmalign.
From: |
guix-commits |
Subject: |
01/04: gnu: Add ngshmmalign. |
Date: |
Fri, 19 Feb 2021 12:05:33 -0500 (EST) |
rekado pushed a commit to branch master
in repository guix.
commit 80d3150c94a1b33072747a81020f805779530324
Author: Ricardo Wurmus <rekado@elephly.net>
AuthorDate: Fri Feb 19 17:24:21 2021 +0100
gnu: Add ngshmmalign.
* gnu/packages/bioinformatics.scm (ngshmmalign): New variable.
---
gnu/packages/bioinformatics.scm | 25 +++++++++++++++++++++++++
1 file changed, 25 insertions(+)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 4e7e49f..a84c1c8 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -7825,6 +7825,31 @@ clusters.")
(home-page "https://sourceforge.net/projects/pardre/")
(license license:gpl3+)))
+(define-public ngshmmalign
+ (package
+ (name "ngshmmalign")
+ (version "0.1.1")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (string-append "https://github.com/cbg-ethz/ngshmmalign/"
+ "releases/download/" version
+ "/ngshmmalign-" version ".tar.bz2"))
+ (sha256
+ (base32
+ "0jryvlssi2r2ii1dxnx39yk6bh4yqgq010fnxrgfgbaj3ykijlzv"))))
+ (build-system cmake-build-system)
+ (arguments '(#:tests? #false)) ; there are none
+ (inputs
+ `(("boost" ,boost)))
+ (home-page "https://github.com/cbg-ethz/ngshmmalign/")
+ (synopsis "Profile HMM aligner for NGS reads")
+ (description
+ "ngshmmalign is a profile HMM aligner for NGS reads designed particularly
+for small genomes (such as those of RNA viruses like HIV-1 and HCV) that
+experience substantial biological insertions and deletions.")
+ (license license:gpl2+)))
+
(define-public ruby-bio-kseq
(package
(name "ruby-bio-kseq")