[Date Prev][Date Next][Thread Prev][Thread Next][Date Index][Thread Index]
03/03: gnu: python-scikit-image: Enable tests.
From: |
guix-commits |
Subject: |
03/03: gnu: python-scikit-image: Enable tests. |
Date: |
Sat, 13 Mar 2021 08:07:29 -0500 (EST) |
ngz pushed a commit to branch master
in repository guix.
commit 0455c19fa56396a460d6f707a39b6da6502b90e8
Author: Vinicius Monego <monego@posteo.net>
AuthorDate: Tue Mar 9 12:51:14 2021 -0300
gnu: python-scikit-image: Enable tests.
* gnu/packages/python-science.scm (python-scikit-image)[arguments]: Add
phases
related to tests.
[native-inputs]: Add python-codecov, python-flake8, python-pytest,
python-pytest-cov, python-pytest-localserver, python-wheel.
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
---
gnu/packages/python-science.scm | 30 +++++++++++++++++++++++++++---
1 file changed, 27 insertions(+), 3 deletions(-)
diff --git a/gnu/packages/python-science.scm b/gnu/packages/python-science.scm
index 4097458..79ee7c8 100644
--- a/gnu/packages/python-science.scm
+++ b/gnu/packages/python-science.scm
@@ -36,6 +36,8 @@
#:use-module (gnu packages maths)
#:use-module (gnu packages perl)
#:use-module (gnu packages python)
+ #:use-module (gnu packages python-build)
+ #:use-module (gnu packages python-check)
#:use-module (gnu packages python-web)
#:use-module (gnu packages python-xyz)
#:use-module (gnu packages sphinx)
@@ -249,9 +251,25 @@ logic, also known as grey logic.")
(base32 "0wgisa03smhrphcjnhq7waa5vyyd32b67hblapjbqrqqj751idpv"))))
(build-system python-build-system)
(arguments
- ;; TODO: Some tests require running X11 server. Disable them?
- '(#:tests? #f))
+ `(#:phases
+ (modify-phases %standard-phases
+ (add-before 'build 'change-home-dir
+ (lambda _
+ ;; Change from /homeless-shelter to /tmp for write permission.
+ (setenv "HOME" "/tmp")
+ #t))
+ (replace 'build
+ (lambda _
+ (invoke "make")))
+ (replace 'check
+ (lambda _
+ ;; The following tests require online data.
+ (invoke "python" "-m" "pytest" "skimage" "--doctest-modules" "-k"
+ (string-append "not test_ndim"
+ " and not test_skin")))))))
;; See requirements/ for the list of build and run time requirements.
+ ;; NOTE: scikit-image has an optional dependency on python-pooch, however
+ ;; propagating it would enable many more tests that require online data.
(propagated-inputs
`(("python-cloudpickle" ,python-cloudpickle)
("python-dask" ,python-dask)
@@ -264,7 +282,13 @@ logic, also known as grey logic.")
("python-scipy" ,python-scipy)
("python-tifffile" ,python-tifffile)))
(native-inputs
- `(("python-cython" ,python-cython)))
+ `(("python-codecov" ,python-codecov)
+ ("python-cython" ,python-cython)
+ ("python-flake8" ,python-flake8)
+ ("python-pytest" ,python-pytest)
+ ("python-pytest-cov" ,python-pytest-cov)
+ ("python-pytest-localserver" ,python-pytest-localserver)
+ ("python-wheel" ,python-wheel)))
(home-page "https://scikit-image.org/")
(synopsis "Image processing in Python")
(description