02/02: gnu: r-gkmsvm: Move back to (gnu packages cran).

[guix-commits]

rekado pushed a commit to branch master
in repository guix.

commit 3eeb7dbf04b5ee3120b3ebcf264d54a56ad934e2
Author: Ricardo Wurmus <rekado@elephly.net>
AuthorDate: Mon Mar 15 12:15:18 2021 +0100

    gnu: r-gkmsvm: Move back to (gnu packages cran).
    
    * gnu/packages/bioconductor.scm (r-gkmsvm): Move this variable from here...
    * gnu/packages/cran.scm (r-gkmsvm): ...to here.
---
 gnu/packages/bioconductor.scm | 27 ---------------------------
 gnu/packages/cran.scm         | 26 ++++++++++++++++++++++++++
 2 files changed, 26 insertions(+), 27 deletions(-)

diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 526c2ee..4f8e056 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -4042,33 +4042,6 @@ visualising metrics relative to experiment run time or 
spatially over the
 surface of a flowcell.")
     (license license:expat)))
 
-;; This is a CRAN package, but it depends on packages from Bioconductor.
-(define-public r-gkmsvm
-  (package
-    (name "r-gkmsvm")
-    (version "0.81.0")
-    (source
-     (origin
-       (method url-fetch)
-       (uri (cran-uri "gkmSVM" version))
-       (sha256
-        (base32
-         "119g5rhc7ffyviz04r04aj5z1g6abnj3ddd01g7db505sdr6lapj"))))
-    (properties `((upstream-name . "gkmSVM")))
-    (build-system r-build-system)
-    (propagated-inputs
-     `(("r-kernlab" ,r-kernlab)
-       ("r-rcpp" ,r-rcpp)
-       ("r-rocr" ,r-rocr)
-       ("r-seqinr" ,r-seqinr)))
-    (home-page "https://cran.r-project.org/web/packages/gkmSVM";)
-    (synopsis "Gapped-kmer support vector machine")
-    (description
-     "This R package provides tools for training gapped-kmer SVM classifiers
-for DNA and protein sequences.  This package supports several sequence
-kernels, including: gkmSVM, kmer-SVM, mismatch kernel and wildcard kernel.")
-    (license license:gpl2+)))
-
 ;; This is a CRAN package, but it depends on multtest from Bioconductor.
 (define-public r-mutoss
   (package
diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index 5854ff6..30c346d 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -16471,6 +16471,32 @@ visualizations and provides the same flexible approach 
to building up plots
 layer by layer.")
     (license license:gpl3)))
 
+(define-public r-gkmsvm
+  (package
+    (name "r-gkmsvm")
+    (version "0.81.0")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (cran-uri "gkmSVM" version))
+       (sha256
+        (base32
+         "119g5rhc7ffyviz04r04aj5z1g6abnj3ddd01g7db505sdr6lapj"))))
+    (properties `((upstream-name . "gkmSVM")))
+    (build-system r-build-system)
+    (propagated-inputs
+     `(("r-kernlab" ,r-kernlab)
+       ("r-rcpp" ,r-rcpp)
+       ("r-rocr" ,r-rocr)
+       ("r-seqinr" ,r-seqinr)))
+    (home-page "https://cran.r-project.org/web/packages/gkmSVM";)
+    (synopsis "Gapped-kmer support vector machine")
+    (description
+     "This R package provides tools for training gapped-kmer SVM classifiers
+for DNA and protein sequences.  This package supports several sequence
+kernels, including: gkmSVM, kmer-SVM, mismatch kernel and wildcard kernel.")
+    (license license:gpl2+)))
+
 (define-public r-varselrf
   (package
     (name "r-varselrf")