02/02: gnu: cwltool: Update to 3.0.20210319143721.

[guix-commits]

arunisaac pushed a commit to branch master
in repository guix.

commit 563e4bd884f59f91d946de175f93fd423186843a
Author: Arun Isaac <arunisaac@systemreboot.net>
AuthorDate: Wed Apr 14 22:36:58 2021 +0530

    gnu: cwltool: Update to 3.0.20210319143721.
    
    * gnu/packages/bioinformatics.scm (cwltool): Update to 3.0.20210319143721.
    [arguments]: In the loosen-version-restrictions phase, relax pytest version
    restriction. In the modify-tests phase, delete file 
tests/test_content_type.py
    since it contains tests that require network access.
---
 gnu/packages/bioinformatics.scm | 10 ++++++----
 1 file changed, 6 insertions(+), 4 deletions(-)

diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 54641c6..41ef4cd 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -2644,7 +2644,7 @@ and record oriented data modeling and the Semantic Web.")
 (define-public cwltool
   (package
     (name "cwltool")
-    (version "3.0.20201121085451")
+    (version "3.0.20210319143721")
     (source (origin
               (method git-fetch)
               (uri (git-reference
@@ -2653,7 +2653,7 @@ and record oriented data modeling and the Semantic Web.")
               (file-name (git-file-name name version))
               (sha256
                (base32
-                "1awf99n7aglxc5zszrlrv6jxp355jp45ws7wpsgjlgcdv7advn0w"))))
+                "1sgs9ckyxb9f9169mc3wm9lnjg4080ai42xqsrwpw9l8apy4c9m5"))))
     (build-system python-build-system)
     (arguments
      `(#:phases
@@ -2661,8 +2661,9 @@ and record oriented data modeling and the Semantic Web.")
          (add-after 'unpack 'loosen-version-restrictions
            (lambda _
              (substitute* "setup.py"
-               (("== 1.5.1") ">=1.5.1") ; prov
-               ((", < 3.5") ""))        ; shellescape
+               (("== 1.5.1") ">=1.5.1")   ; prov
+               ((", < 3.5") "")           ; shellescape
+               ((" >= 6.0.2, < 6.2") "")) ; pytest
              #t))
          (add-after 'unpack 'dont-use-git
            (lambda _
@@ -2674,6 +2675,7 @@ and record oriented data modeling and the Semantic Web.")
          (add-after 'unpack 'modify-tests
            (lambda _
              ;; Tries to connect to the internet.
+             (delete-file "tests/test_content_type.py")
              (delete-file "tests/test_udocker.py")
              (delete-file "tests/test_http_input.py")
              (substitute* "tests/test_load_tool.py"