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branch master updated: gnu: Add r-zinbwave.
From: |
guix-commits |
Subject: |
branch master updated: gnu: Add r-zinbwave. |
Date: |
Wed, 26 May 2021 17:09:28 -0400 |
This is an automated email from the git hooks/post-receive script.
roelj pushed a commit to branch master
in repository guix.
The following commit(s) were added to refs/heads/master by this push:
new 1edec0e gnu: Add r-zinbwave.
1edec0e is described below
commit 1edec0e8999cf4900fa0eddb4e11a790021a002c
Author: Roel Janssen <roel@gnu.org>
AuthorDate: Wed May 26 23:09:06 2021 +0200
gnu: Add r-zinbwave.
* gnu/packages/bioconductor.scm (r-zinbwave): New variable.
---
gnu/packages/bioconductor.scm | 33 +++++++++++++++++++++++++++++++++
1 file changed, 33 insertions(+)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 8ec7a6d..23a87c3 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -6629,6 +6629,39 @@ deployed as a centralized bioinformatics resource for
use by many users.
Currently only Affymetrix oligonucleotide analysis is supported.")
(license license:gpl2+)))
+(define-public r-zinbwave
+ (package
+ (name "r-zinbwave")
+ (version "1.12.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "zinbwave" version))
+ (sha256
+ (base32
+ "0m5f0wrk6kg88m41cchjwi4ssi7kr3196m8h9hrhygak964nsd4q"))))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-biocparallel" ,r-biocparallel)
+ ("r-edger" ,r-edger)
+ ("r-genefilter" ,r-genefilter)
+ ("r-matrix" ,r-matrix)
+ ("r-singlecellexperiment" ,r-singlecellexperiment)
+ ("r-softimpute" ,r-softimpute)
+ ("r-summarizedexperiment" ,r-summarizedexperiment)))
+ (native-inputs
+ `(("r-knitr" ,r-knitr)))
+ (home-page "https://bioconductor.org/packages/zinbwave")
+ (synopsis "Zero-inflated negative binomial model for RNA-seq data")
+ (description "This package implements a general and flexible zero-inflated
+negative binomial model that can be used to provide a low-dimensional
+representations of single-cell RNA-seq data. The model accounts for zero
+inflation (dropouts), over-dispersion, and the count nature of the data.
+The model also accounts for the difference in library sizes and optionally
+for batch effects and/or other covariates, avoiding the need for pre-normalize
+the data.")
+ (license license:artistic2.0)))
+
(define-public r-zfpkm
(package
(name "r-zfpkm")
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