02/02: gnu: Add r-chicago.

[guix-commits]

rekado pushed a commit to branch master
in repository guix.

commit ef5468ff0ed2f943cae8d3dece0e964e295b533a
Author: Ricardo Wurmus <rekado@elephly.net>
AuthorDate: Thu Jun 17 14:57:47 2021 +0200

    gnu: Add r-chicago.
    
    * gnu/packages/bioconductor.scm (r-chicago): New variable.
---
 gnu/packages/bioconductor.scm | 26 ++++++++++++++++++++++++++
 1 file changed, 26 insertions(+)

diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index c5509dc..35fb43b 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -9949,6 +9949,32 @@ each motif and gene-set, RcisTarget predicts the 
candidate target genes (i.e.
 genes in the gene-set that are ranked above the leading edge).")
     (license license:gpl3)))
 
+(define-public r-chicago
+  (package
+    (name "r-chicago")
+    (version "1.20.0")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (bioconductor-uri "Chicago" version))
+       (sha256
+        (base32
+         "0dkwy6pfvzd7g4qmhjl24ypn92l78w1zy0ajhcxgg39f7zsq883x"))))
+    (properties `((upstream-name . "Chicago")))
+    (build-system r-build-system)
+    (propagated-inputs
+     `(("r-data-table" ,r-data-table)
+       ("r-delaporte" ,r-delaporte)
+       ("r-hmisc" ,r-hmisc)
+       ("r-mass" ,r-mass)
+       ("r-matrixstats" ,r-matrixstats)))
+    (native-inputs `(("r-knitr" ,r-knitr)))
+    (home-page "https://bioconductor.org/packages/Chicago";)
+    (synopsis "Capture Hi-C analysis of genomic organization")
+    (description
+     "This package provides a pipeline for analysing Capture Hi-C data.")
+    (license license:artistic2.0)))
+
 (define-public r-cicero
   (package
     (name "r-cicero")