[Date Prev][Date Next][Thread Prev][Thread Next][Date Index][Thread Index]
07/08: gnu: Add r-leidenbase.
From: |
guix-commits |
Subject: |
07/08: gnu: Add r-leidenbase. |
Date: |
Mon, 21 Jun 2021 11:54:42 -0400 (EDT) |
rekado pushed a commit to branch master
in repository guix.
commit 7209beb694401a0a180c43e11f1d7efd9807aafc
Author: Ricardo Wurmus <rekado@elephly.net>
AuthorDate: Mon Jun 21 17:52:00 2021 +0200
gnu: Add r-leidenbase.
* gnu/packages/bioconductor.scm (r-leidenbase): New variable.
---
gnu/packages/bioconductor.scm | 34 ++++++++++++++++++++++++++++++++++
1 file changed, 34 insertions(+)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index fd9d80c..f218fd1 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -6371,6 +6371,40 @@ tasks on single cell expression data. It is designed to
work with RNA-Seq and
qPCR data, but could be used with other types as well.")
(license license:artistic2.0)))
+(define-public r-leidenbase
+ (let ((commit "430f22af6982cc7d2e6e77f6b0df47bc970dcbce")
+ (revision "1"))
+ (package
+ (name "r-leidenbase")
+ (version (git-version "0.1.3" revision commit))
+ (source
+ (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/cole-trapnell-lab/leidenbase")
+ (commit commit)))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32
+ "0ylqsmdpv4xq6f6ldxvwkhk33a9i1jcgk60zvksk3iplykfzd6c0"))))
+ (properties `((upstream-name . "leidenbase")))
+ (build-system r-build-system)
+ (inputs
+ `(("zlib" ,zlib)))
+ (native-inputs
+ `(("gfortran" ,gfortran)))
+ (propagated-inputs
+ `(("r-igraph" ,r-igraph)))
+ (home-page "https://github.com/cole-trapnell-lab/leidenbase")
+ (synopsis "R and C wrappers to run the Leiden find_partition function")
+ (description
+ "This package provides an R to C interface that runs the Leiden
+community detection algorithm to find a basic partition. It runs the
+equivalent of the @code{find_partition} function. This package includes the
+required source code files from the official Leidenalg distribution and
+several functions from the R igraph package.")
+ (license license:gpl3+))))
+
(define-public r-monocle3
(package
(name "r-monocle3")
- branch master updated (cfe79af -> c442714), guix-commits, 2021/06/21
- 04/08: gnu: r-monocle3: Add missing input., guix-commits, 2021/06/21
- 01/08: gnu: python-aws-sam-translator: Update to 1.36.0., guix-commits, 2021/06/21
- 03/08: gnu: python-cfn-lint: Update to 0.51.0., guix-commits, 2021/06/21
- 05/08: gnu: Add r-residualmatrix., guix-commits, 2021/06/21
- 02/08: gnu: python-pyyaml: Update to 5.4.1., guix-commits, 2021/06/21
- 07/08: gnu: Add r-leidenbase.,
guix-commits <=
- 06/08: gnu: Add r-batchelor., guix-commits, 2021/06/21
- 08/08: gnu: r-monocle3: Update to 1.0.0., guix-commits, 2021/06/21