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10/13: gnu: Add r-battenberg.
From: |
guix-commits |
Subject: |
10/13: gnu: Add r-battenberg. |
Date: |
Wed, 21 Jul 2021 07:52:06 -0400 (EDT) |
lbraun pushed a commit to branch master
in repository guix.
commit 73830b5da3f71d4418e07e28544207dad2d0809f
Author: Lars-Dominik Braun <lars@6xq.net>
AuthorDate: Wed Jul 21 11:48:07 2021 +0200
gnu: Add r-battenberg.
* gnu/packages/bioinformatics.scm (r-battenberg): New variable.
---
gnu/packages/bioinformatics.scm | 30 ++++++++++++++++++++++++++++++
1 file changed, 30 insertions(+)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index fbb7774..0c8ff2b 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -14689,3 +14689,33 @@ instruments, or Pacific Biosciences RSII or Sequel
sequencers.")
Number Analysis of Tumors} R package that can be used to infer tumour purity,
ploidy and allele-specific copy number profiles.")
(license license:gpl3)))
+
+(define-public r-battenberg
+ (package
+ (name "r-battenberg")
+ (version "2.2.9")
+ (source (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/Wedge-lab/battenberg.git")
+ (commit (string-append "v" version))))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32
+ "0nmcq4c7y5g8h8lxsq9vadz9bj4qgqn118alip520ny6czaxki4h"))))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-devtools" ,r-devtools)
+ ("r-readr" ,r-readr)
+ ("r-doparallel" ,r-doparallel)
+ ("r-ggplot2" ,r-ggplot2)
+ ("r-rcolorbrewer" ,r-rcolorbrewer)
+ ("r-gridextra" ,r-gridextra)
+ ("r-gtools" ,r-gtools)
+ ("r-ascat" ,r-ascat)))
+ (home-page "https://github.com/Wedge-lab/battenberg")
+ (synopsis "Subclonal copy number estimation in R")
+ (description "This package contains the Battenberg R package for subclonal
+copy number estimation, as described by
+@url{doi:10.1016/j.cell.2012.04.023,Nik-Zainal et al.}")
+ (license license:gpl3)))
- 02/13: gnu: Add r-naniar., (continued)
- 02/13: gnu: Add r-naniar., guix-commits, 2021/07/21
- 01/13: gnu: Add r-norm., guix-commits, 2021/07/21
- 04/13: gnu: Add r-rmisc., guix-commits, 2021/07/21
- 07/13: gnu: Add python-pyvcf., guix-commits, 2021/07/21
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- 03/13: gnu: Add r-glinternet., guix-commits, 2021/07/21
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- 13/13: gnu: Add python-sparqlkernel., guix-commits, 2021/07/21
- 06/13: gnu: checkm: Rename and update to 1.1.3., guix-commits, 2021/07/21
- 12/13: gnu: Add python-sparqlwrapper., guix-commits, 2021/07/21
- 10/13: gnu: Add r-battenberg.,
guix-commits <=
- 05/13: gnu: Add tombo., guix-commits, 2021/07/21
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