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branch master updated: gnu: Add r-scdblfinder.
From: |
guix-commits |
Subject: |
branch master updated: gnu: Add r-scdblfinder. |
Date: |
Thu, 02 Dec 2021 04:07:20 -0500 |
This is an automated email from the git hooks/post-receive script.
rekado pushed a commit to branch master
in repository guix.
The following commit(s) were added to refs/heads/master by this push:
new c2c63a0 gnu: Add r-scdblfinder.
c2c63a0 is described below
commit c2c63a00de414124a1ca1a84f2cc3e8785ad243d
Author: Ricardo Wurmus <rekado@elephly.net>
AuthorDate: Thu Dec 2 10:02:54 2021 +0100
gnu: Add r-scdblfinder.
* gnu/packages/bioconductor.scm (r-scdblfinder): New variable.
---
gnu/packages/bioconductor.scm | 40 ++++++++++++++++++++++++++++++++++++++++
1 file changed, 40 insertions(+)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index bcd26c7..6fd51b9 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -4193,6 +4193,46 @@ differential expression analysis, RNAseq data and
related problems.")
;; Any version of the LGPL
(license license:lgpl3+)))
+(define-public r-scdblfinder
+ (package
+ (name "r-scdblfinder")
+ (version "1.8.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "scDblFinder" version))
+ (sha256
+ (base32 "0wzmmcsnjybgzbc5rn4i72n26j9n59dfy1zg8ij0q8p4276jplsd"))))
+ (properties `((upstream-name . "scDblFinder")))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-biocgenerics" ,r-biocgenerics)
+ ("r-biocneighbors" ,r-biocneighbors)
+ ("r-biocparallel" ,r-biocparallel)
+ ("r-biocsingular" ,r-biocsingular)
+ ("r-bluster" ,r-bluster)
+ ("r-delayedarray" ,r-delayedarray)
+ ("r-igraph" ,r-igraph)
+ ("r-mass" ,r-mass)
+ ("r-matrix" ,r-matrix)
+ ("r-s4vectors" ,r-s4vectors)
+ ("r-scater" ,r-scater)
+ ("r-scran" ,r-scran)
+ ("r-scuttle" ,r-scuttle)
+ ("r-singlecellexperiment" ,r-singlecellexperiment)
+ ("r-summarizedexperiment" ,r-summarizedexperiment)
+ ("r-xgboost" ,r-xgboost)))
+ (native-inputs `(("r-knitr" ,r-knitr)))
+ (home-page "https://github.com/plger/scDblFinder")
+ (synopsis "Detect multiplets in single-cell RNA sequencing data")
+ (description
+ "The scDblFinder package gathers various methods for the detection and
+handling of doublets/multiplets in single-cell RNA sequencing data (i.e.
+multiple cells captured within the same droplet or reaction volume). It
+includes methods formerly found in the scran package, and the new fast and
+comprehensive scDblFinder method.")
+ (license license:gpl3)))
+
(define-public r-seqlogo
(package
(name "r-seqlogo")
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