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03/08: gnu: python-bx-python: Update to 0.8.12.
From: |
guix-commits |
Subject: |
03/08: gnu: python-bx-python: Update to 0.8.12. |
Date: |
Tue, 7 Dec 2021 05:51:22 -0500 (EST) |
rekado pushed a commit to branch core-updates-frozen
in repository guix.
commit 699b443c86322554494fccf4cca81f80104be11f
Author: Ricardo Wurmus <rekado@elephly.net>
AuthorDate: Tue Dec 7 11:36:48 2021 +0100
gnu: python-bx-python: Update to 0.8.12.
* gnu/packages/bioinformatics.scm (python-bx-python): Update to 0.8.12.
[propagated-inputs]: Remove python-six.
[arguments]: Remove. Tests are still not run, though.
---
gnu/packages/bioinformatics.scm | 16 ++++++++--------
1 file changed, 8 insertions(+), 8 deletions(-)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 9674992..7d9ff09 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -2267,19 +2267,19 @@ off-target reads for a capture method that targets
CpG-rich region.")
(define-public python-bx-python
(package
(name "python-bx-python")
- (version "0.8.2")
+ (version "0.8.12")
(source (origin
- (method url-fetch)
- (uri (pypi-uri "bx-python" version))
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/bxlab/bx-python")
+ (commit "f4e6a5c93e719db69b5798b6fdd9b167da358316")))
+ (file-name (git-file-name name version))
(sha256
(base32
- "11kksg2rbzihpmcid823xvg42xi88m7sz58rzk29abybkxy0rszs"))))
+ "0mclahslz34vq9x424jmzsxk0nmpm1j716fa8h3zwr9ssvch7skc"))))
(build-system python-build-system)
- ;; Tests fail because test data are not included
- (arguments '(#:tests? #f))
(propagated-inputs
- `(("python-numpy" ,python-numpy)
- ("python-six" ,python-six)))
+ `(("python-numpy" ,python-numpy)))
(inputs
`(("zlib" ,zlib)))
(native-inputs
- branch core-updates-frozen updated (4afacd4 -> 06fca01), guix-commits, 2021/12/07
- 02/08: gnu: Remove pbtranscript-tofu., guix-commits, 2021/12/07
- 01/08: gnu: python-pyfit-sne: Update to 1.2.1., guix-commits, 2021/12/07
- 03/08: gnu: python-bx-python: Update to 0.8.12.,
guix-commits <=
- 04/08: gnu: Remove python2-bx-python., guix-commits, 2021/12/07
- 05/08: gnu: crossmap: Update to 0.6.1., guix-commits, 2021/12/07
- 06/08: gnu: hisat: Remove invalid characters., guix-commits, 2021/12/07
- 08/08: gnu: hisat: Update to 0.1.6., guix-commits, 2021/12/07
- 07/08: gnu: hisat: Remove trailing #T., guix-commits, 2021/12/07