02/09: gnu: bwa-pssm: Fix build.

[guix-commits]

rekado pushed a commit to branch core-updates-frozen
in repository guix.

commit b764d10e9185cb6a250c94c487e8c5f35078c13b
Author: Ricardo Wurmus <rekado@elephly.net>
AuthorDate: Tue Dec 7 17:53:14 2021 +0100

    gnu: bwa-pssm: Fix build.
    
    * gnu/packages/bioinformatics.scm (bwa-pssm)[arguments]: Add phase
    'patch-C-error.
---
 gnu/packages/bioinformatics.scm | 8 ++++++++
 1 file changed, 8 insertions(+)

diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 8ca3d12..50f1a18 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -2243,6 +2243,14 @@ and more accurate.  BWA-MEM also has better performance 
than BWA-backtrack for
                (base32
                 "076c4q0cdqz8jgylb067y9zmvxglppnzi3qiscn0xiypgc6lgb5r"))))
     (build-system gnu-build-system)
+    (arguments
+     (substitute-keyword-arguments (package-arguments bwa)
+       ((#:phases phases '%standard-phases)
+        `(modify-phases ,phases
+           (add-after 'unpack 'patch-C-error
+             (lambda _
+               (substitute* "pssm.c"
+                 (("inline int map") "int map"))))))))
     (inputs
      `(("gdsl" ,gdsl)
        ("zlib" ,zlib)