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08/14: gnu: tbsp: Update to 1.0.0-2.dc30c03.
From: |
guix-commits |
Subject: |
08/14: gnu: tbsp: Update to 1.0.0-2.dc30c03. |
Date: |
Wed, 8 Dec 2021 08:33:41 -0500 (EST) |
rekado pushed a commit to branch core-updates-frozen
in repository guix.
commit 1f63c46a1caae562d1745a400956d169af090339
Author: Ricardo Wurmus <rekado@elephly.net>
AuthorDate: Wed Dec 8 13:16:54 2021 +0100
gnu: tbsp: Update to 1.0.0-2.dc30c03.
* gnu/packages/bioinformatics.scm (tbsp): Update to 1.0.0-2.dc30c03.
[arguments]: Relax requirement on matplot. This may turn out to be a
mistake.
[inputs]: Replace python-biopython with python-biopython-1.73.
---
gnu/packages/bioinformatics.scm | 17 ++++++++++++-----
1 file changed, 12 insertions(+), 5 deletions(-)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 90f26be..de15f0a 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -13946,8 +13946,8 @@ and reflect the fast5 file schema, and tools to convert
between
(license license:mpl2.0)))
(define-public tbsp
- (let ((commit "ec8fff4410cfb13a677dbbb95cbbc60217e64907")
- (revision "1"))
+ (let ((commit "dc30c03868233c5504299c9cb0d7b2064ba9cb41")
+ (revision "2"))
(package
(name "tbsp")
(version (git-version "1.0.0" revision commit))
@@ -13960,15 +13960,22 @@ and reflect the fast5 file schema, and tools to
convert between
(file-name (git-file-name name version))
(sha256
(base32
- "025ym14x8gbd6hb55lsinqj6f5qzw36i10klgs7ldzxxd7s39ki1"))))
+ "1im0bik2hxkcb7jzkcxp5nqb30hd8lfraxml6i5ik52j6z3qqln1"))))
(build-system python-build-system)
- (arguments '(#:tests? #f)) ; no tests included
+ (arguments
+ '(#:tests? #f ; no tests included
+ #:phases
+ (modify-phases %standard-phases
+ (add-after 'unpack 'relax-requirements
+ (lambda _
+ (substitute* "setup.py"
+ ((", <3.0") ""))))))) ; matplotlib
(inputs
`(("python-matplotlib" ,python-matplotlib)
("python-networkx" ,python-networkx)
("python-numpy" ,python-numpy)
("python-pybigwig" ,python-pybigwig)
- ("python-biopython" ,python-biopython)
+ ("python-biopython" ,python-biopython-1.73)
("python-scikit-learn" ,python-scikit-learn)
("python-scipy" ,python-scipy)))
(home-page "https://github.com/phoenixding/tbsp/")
- branch core-updates-frozen updated (ee03b51 -> c806005), guix-commits, 2021/12/08
- 04/14: gnu: snap-aligner: Remove trailing #T., guix-commits, 2021/12/08
- 02/14: gnu: khmer: Cythonize source files., guix-commits, 2021/12/08
- 05/14: gnu: snap-aligner: Update to 2.0.0., guix-commits, 2021/12/08
- 06/14: gnu: imp: Disable tests., guix-commits, 2021/12/08
- 01/14: gnu: cwltool: Update to 3.1.20211107152837., guix-commits, 2021/12/08
- 08/14: gnu: tbsp: Update to 1.0.0-2.dc30c03.,
guix-commits <=
- 03/14: gnu: snap-aligner: Run tests conditionally., guix-commits, 2021/12/08
- 07/14: gnu: mantis: Update to 0.1-2.b6979a2., guix-commits, 2021/12/08
- 09/14: gnu: discrover: Remove trailing #T., guix-commits, 2021/12/08
- 10/14: gnu: discrover: Add texlive-fonts-ec to inputs., guix-commits, 2021/12/08
- 14/14: gnu: ocaml-mcl: Add -fcommon to compiler flags., guix-commits, 2021/12/08
- 12/14: gnu: paml: Remove trailing #T., guix-commits, 2021/12/08
- 11/14: gnu: sambamba: Remove trailing #T., guix-commits, 2021/12/08
- 13/14: gnu: paml: Pass -fcommon to compiler., guix-commits, 2021/12/08