09/09: gnu: opencv: Update to 4.5.4.

[guix-commits]

rekado pushed a commit to branch master
in repository guix.

commit 5894b1210d689ec408db21184b85b0a6a1a5ca3e
Author: Ricardo Wurmus <rekado@elephly.net>
AuthorDate: Mon Dec 20 23:19:41 2021 +0100

    gnu: opencv: Update to 4.5.4.
    
    * gnu/packages/patches/opencv-fix-build-of-grfmt_jpeg2000.cpp.patch: Delete 
file.
    * gnu/packages/patches/opencv-rgbd-aarch64-test-fix.patch: Delete file.
    * gnu/local.mk (dist_patch_DATA): Remove patches.
    * gnu/packages/image-processing.scm (opencv): Update to 4.5.4.
    [source]: Remove patch; keep bundled quirc.
    [arguments]: Build without ade; update build phase 'disable-broken-tests;
    remove build phase 'add-ilmbase-include-path.
    [native-inputs]: Update source hashes for opencv-contrib and opencv-extra.
    [inputs]: Use new style; add imath and openblas; replace openexr-2 with
    openexr.
    [description]: Reformat first paragraph.
---
 gnu/local.mk                                       |   2 -
 gnu/packages/image-processing.scm                  | 130 ++++++++++-----------
 .../opencv-fix-build-of-grfmt_jpeg2000.cpp.patch   |  39 -------
 .../patches/opencv-rgbd-aarch64-test-fix.patch     |  40 -------
 4 files changed, 65 insertions(+), 146 deletions(-)

diff --git a/gnu/local.mk b/gnu/local.mk
index d20a510..72fa405 100644
--- a/gnu/local.mk
+++ b/gnu/local.mk
@@ -1549,8 +1549,6 @@ dist_patch_DATA =                                         
\
   %D%/packages/patches/onnx-skip-model-downloads.patch         \
   %D%/packages/patches/openbabel-fix-crash-on-nwchem-output.patch      \
   %D%/packages/patches/opencascade-oce-glibc-2.26.patch                \
-  %D%/packages/patches/opencv-fix-build-of-grfmt_jpeg2000.cpp.patch    \
-  %D%/packages/patches/opencv-rgbd-aarch64-test-fix.patch      \
   %D%/packages/patches/openfoam-4.1-cleanup.patch                      \
   %D%/packages/patches/openjdk-10-idlj-reproducibility.patch   \
   %D%/packages/patches/openjdk-14-builtins.patch                \
diff --git a/gnu/packages/image-processing.scm 
b/gnu/packages/image-processing.scm
index 75e76c3..3281618 100644
--- a/gnu/packages/image-processing.scm
+++ b/gnu/packages/image-processing.scm
@@ -375,7 +375,7 @@ integrates with various databases on GUI toolkits such as 
Qt and Tk.")
 (define-public opencv
   (package
     (name "opencv")
-    (version "3.4.3")
+    (version "4.5.4")
     (source (origin
               (method git-fetch)
               (uri (git-reference
@@ -384,14 +384,34 @@ integrates with various databases on GUI toolkits such as 
Qt and Tk.")
               (file-name (git-file-name name version))
               (sha256
                (base32
-                "06bc61r8myym4s8im10brdjfg4wxkrvsbhhl7vr1msdan2xddzi3"))
-              (patches
-               (search-patches "opencv-fix-build-of-grfmt_jpeg2000.cpp.patch"))
+                "0gf2xs3r4s51m20mpf0wdidpk0xzp3m2w6jx72fwldhn0pshlmcj"))
               (modules '((guix build utils)))
               (snippet
                '(begin
-                  ;; Remove external libraries. We have all available in Guix:
-                  (delete-file-recursively "3rdparty")
+                  ;; Remove external libraries. We have almost all available
+                  ;; in Guix:
+                  (with-directory-excursion "3rdparty"
+                    (for-each delete-file-recursively
+                              '("carotene"
+                                "cpufeatures"
+                                "ffmpeg"
+                                "include"
+                                "ippicv"
+                                "ittnotify"
+                                "libjasper"
+                                "libjpeg"
+                                "libjpeg-turbo"
+                                "libpng"
+                                "libtengine"
+                                "libtiff"
+                                "libwebp"
+                                "openexr"
+                                "openjpeg"
+                                "openvx"
+                                "protobuf"
+                                ;;"quirc"
+                                "tbb"
+                                "zlib")))
 
                   ;; Milky icon set is non-free:
                   (delete-file-recursively 
"modules/highgui/src/files_Qt/Milky")
@@ -403,7 +423,8 @@ integrates with various databases on GUI toolkits such as 
Qt and Tk.")
     (build-system cmake-build-system)
     (arguments
      `(#:configure-flags
-       (list "-DWITH_IPP=OFF"
+       (list "-DWITH_ADE=OFF" ;we don't have a package for ade yet
+             "-DWITH_IPP=OFF"
              "-DWITH_ITT=OFF"
              "-DWITH_CAROTENE=OFF" ; only visible on arm/aarch64
              "-DENABLE_PRECOMPILED_HEADERS=OFF"
@@ -456,30 +477,19 @@ integrates with various databases on GUI toolkits such as 
Qt and Tk.")
        (modify-phases %standard-phases
          (add-after 'unpack 'disable-broken-tests
            (lambda _
-             ;; These tests fails with:
-             ;; vtkXOpenGLRenderWindow (0x723990): Could not find a decent 
config
-             ;; I think we have no OpenGL support with the Xvfb.
-             (substitute* '("modules/viz/test/test_tutorial3.cpp"
-                            "modules/viz/test/test_main.cpp"
-                            "modules/viz/test/tests_simple.cpp"
-                            "modules/viz/test/test_viz3d.cpp")
-               (("(TEST\\(Viz, )([a-z].*\\).*)" all pre post)
-                (string-append pre "DISABLED_" post)))
-
-             ;; This one fails with "unknown file: Failure"
+             ;; This test fails with "unknown file: Failure"
              ;; But I couldn't figure out which file was missing:
              (substitute* 
"../opencv-contrib/modules/face/test/test_face_align.cpp"
                (("(TEST\\(CV_Face_FacemarkKazemi, )(can_detect_landmarks\\).*)"
                  all pre post)
                 (string-append pre "DISABLED_" post)))
 
-             ;; Failure reason: Bad accuracy
-             ;; Incorrect count of accurate poses [2nd case]: 90.000000 / 
94.000000
-             (substitute* 
"../opencv-contrib/modules/rgbd/test/test_odometry.cpp"
-               (("(TEST\\(RGBD_Odometry_Rgbd, )(algorithmic\\).*)" all pre 
post)
-                (string-append pre "DISABLED_" post)))
-             #t))
-
+             ;; These fail with protobuf parse errors that come from
+             ;; opencv-extra/testdata.
+             (substitute* "modules/dnn/test/test_layers.cpp"
+               (("(TEST_P\\(Test_Caffe_layers, )\
+(Accum\\).*|DataAugmentation\\).*|Resample\\).*|Correlation\\).*)" all pre 
post)
+                (string-append pre "DISABLED_" post)))))
          (add-after 'unpack 'unpack-submodule-sources
            (lambda* (#:key inputs #:allow-other-keys)
              (mkdir "../opencv-extra")
@@ -488,18 +498,6 @@ integrates with various databases on GUI toolkits such as 
Qt and Tk.")
                                "../opencv-extra")
              (copy-recursively (assoc-ref inputs "opencv-contrib")
                                "../opencv-contrib")))
-
-         (add-after 'set-paths 'add-ilmbase-include-path
-           (lambda* (#:key inputs #:allow-other-keys)
-           ;; OpenEXR propagates ilmbase, but its include files do not appear
-           ;; in the CPATH, so we need to add "$ilmbase/include/OpenEXR/" to
-           ;; the CPATH to satisfy the dependency on "ImathVec.h".
-           (setenv "CPATH"
-                   (string-append
-                    (string-drop-right
-                     (search-input-file inputs "include/OpenEXR/ImathVec.h")
-                     11)
-                    ":" (or (getenv "CPATH") "")))))
        (add-before 'check 'start-xserver
          (lambda* (#:key inputs #:allow-other-keys)
            (let ((xorg-server (assoc-ref inputs "xorg-server"))
@@ -516,48 +514,50 @@ integrates with various databases on GUI toolkits such as 
Qt and Tk.")
         ,(origin
            (method git-fetch)
            (uri (git-reference
-                  (url "https://github.com/opencv/opencv_extra";)
-                  (commit version)))
+                 (url "https://github.com/opencv/opencv_extra";)
+                 (commit version)))
            (file-name (git-file-name "opencv_extra" version))
            (sha256
-            (base32 "08p5xnq8n1jw8svvz0fnirfg7q8dm3p4a5dl7527s5xj0f9qn7lp"))))
+            (base32 "1fg2hxdvphdvagc2fkmhqk7qql9mp7pj2bmp8kmd7vicpr72qk82"))))
        ("opencv-contrib"
         ,(origin
            (method git-fetch)
            (uri (git-reference
-                  (url "https://github.com/opencv/opencv_contrib";)
-                  (commit version)))
+                 (url "https://github.com/opencv/opencv_contrib";)
+                 (commit version)))
            (file-name (git-file-name "opencv_contrib" version))
-           (patches (search-patches "opencv-rgbd-aarch64-test-fix.patch"))
            (sha256
-            (base32 
"1f334glf39nk42mpqq6j732h3ql2mpz89jd4mcl678s8n73nfjh2"))))))
-    (inputs `(("libjpeg" ,libjpeg-turbo)
-              ("libpng" ,libpng)
-              ("jasper" ,jasper)
-              ;; ffmpeg 4.0 causes core dumps in tests.
-              ("ffmpeg" ,ffmpeg-3.4)
-              ("libtiff" ,libtiff)
-              ("hdf5" ,hdf5)
-              ("libgphoto2" ,libgphoto2)
-              ("libwebp" ,libwebp)
-              ("zlib" ,zlib)
-              ("gtkglext" ,gtkglext)
-              ("openexr" ,openexr-2)
-              ("ilmbase" ,ilmbase)
-              ("gtk+" ,gtk+-2)
-              ("python-numpy" ,python-numpy)
-              ("protobuf" ,protobuf)
-              ("vtk" ,vtk)
-              ("python" ,python)))
+            (base32 
"0ga0l4ranp1834gxgp487ll1amvmssa02l2nk5ja5w0rx4d8hh26"))))))
+    (inputs
+     (list ffmpeg
+           gtk+
+           gtkglext
+           hdf5
+           ilmbase
+           imath ;should be propagated by openexr
+           jasper
+           libgphoto2
+           libjpeg-turbo
+           libpng
+           libtiff
+           libwebp
+           openblas
+           openexr
+           openjpeg
+           protobuf
+           python
+           python-numpy
+           vtk
+           zlib))
     ;; These three CVEs are not a problem of OpenCV, see:
     ;; https://github.com/opencv/opencv/issues/10998
     (properties '((lint-hidden-cve . ("CVE-2018-7712"
                                       "CVE-2018-7713"
                                       "CVE-2018-7714"))))
     (synopsis "Computer vision library")
-    (description "OpenCV is a library aimed at
-real-time computer vision, including several hundred computer
-vision algorithms.  It can be used to do things like:
+    (description "OpenCV is a library aimed at real-time computer vision,
+including several hundred computer vision algorithms.  It can be used to do
+things like:
 
 @itemize
 @item image and video input and output
diff --git a/gnu/packages/patches/opencv-fix-build-of-grfmt_jpeg2000.cpp.patch 
b/gnu/packages/patches/opencv-fix-build-of-grfmt_jpeg2000.cpp.patch
deleted file mode 100644
index 8deb602..0000000
--- a/gnu/packages/patches/opencv-fix-build-of-grfmt_jpeg2000.cpp.patch
+++ /dev/null
@@ -1,39 +0,0 @@
-From: Tobias Geerinckx-Rice <me@tobias.gr>
-Date: Thu, 13 Aug 2020 15:21:30 +0200
-Subject: [PATCH] gnu: opencv: Fix build with Jasper 2.0.19.
-
-Taken verbatim from upstream: <https://github.com/opencv/opencv/issues/17984>.
-
-From f66fc199a20882c546fa31142e9c0f5a8b3cf983 Mon Sep 17 00:00:00 2001
-From: Florian Jung <flo@windfis.ch>
-Date: Wed, 29 Jul 2020 18:51:55 +0200
-Subject: [PATCH] Fix build of grfmt_jpeg2000.cpp
-
-libjasper has recently changed `jas_matrix_get` from a macro to an inline 
function
-(389951d071 in https://github.com/jasper-software/jasper), causing the build 
to fail.
----
- modules/imgcodecs/src/grfmt_jpeg2000.cpp | 4 ++--
- 1 file changed, 2 insertions(+), 2 deletions(-)
-
-diff --git a/modules/imgcodecs/src/grfmt_jpeg2000.cpp 
b/modules/imgcodecs/src/grfmt_jpeg2000.cpp
-index fe69f80c86f..0f4d28d6f4d 100644
---- a/modules/imgcodecs/src/grfmt_jpeg2000.cpp
-+++ b/modules/imgcodecs/src/grfmt_jpeg2000.cpp
-@@ -377,7 +377,7 @@ bool  Jpeg2KDecoder::readComponent8u( uchar *data, void 
*_buffer,
- 
-     for( y = 0; y < yend - ystart; )
-     {
--        jas_seqent_t* pix_row = &jas_matrix_get( buffer, y / ystep, 0 );
-+        jas_seqent_t* pix_row = jas_matrix_getref( buffer, y / ystep, 0 );
-         uchar* dst = data + (y - yoffset) * step - xoffset;
- 
-         if( xstep == 1 )
-@@ -443,7 +443,7 @@ bool  Jpeg2KDecoder::readComponent16u( unsigned short 
*data, void *_buffer,
- 
-     for( y = 0; y < yend - ystart; )
-     {
--        jas_seqent_t* pix_row = &jas_matrix_get( buffer, y / ystep, 0 );
-+        jas_seqent_t* pix_row = jas_matrix_getref( buffer, y / ystep, 0 );
-         ushort* dst = data + (y - yoffset) * step - xoffset;
- 
-         if( xstep == 1 )
diff --git a/gnu/packages/patches/opencv-rgbd-aarch64-test-fix.patch 
b/gnu/packages/patches/opencv-rgbd-aarch64-test-fix.patch
deleted file mode 100644
index 7792f8d..0000000
--- a/gnu/packages/patches/opencv-rgbd-aarch64-test-fix.patch
+++ /dev/null
@@ -1,40 +0,0 @@
-https://github.com/opencv/opencv_contrib/commit/8aaa91c3dc835690477d7777e66948dbf5a87edc.patch
-
-From 8aaa91c3dc835690477d7777e66948dbf5a87edc Mon Sep 17 00:00:00 2001
-From: Tomoaki Teshima <tomoaki.teshima@gmail.com>
-Date: Mon, 5 Nov 2018 20:32:23 +0900
-Subject: [PATCH] avoid test failing on Aarch64   * loosen the threshold in
- Rgbd_Normals.compute   * make the minimum tvec larger in
- RGBD_Odometry_Rgbd.algorithmic
-
----
- modules/rgbd/test/test_normal.cpp   | 2 +-
- modules/rgbd/test/test_odometry.cpp | 2 +-
- 2 files changed, 2 insertions(+), 2 deletions(-)
-
-diff --git a/modules/rgbd/test/test_normal.cpp 
b/modules/rgbd/test/test_normal.cpp
-index f2233553a7..ed54f2cd98 100644
---- a/modules/rgbd/test/test_normal.cpp
-+++ b/modules/rgbd/test/test_normal.cpp
-@@ -211,7 +211,7 @@ class CV_RgbdNormalsTest: public cvtest::BaseTest
-             std::cout << std::endl << "*** FALS" << std::endl;
-             errors[0][0] = 0.006f;
-             errors[0][1] = 0.03f;
--            errors[1][0] = 0.00008f;
-+            errors[1][0] = 0.0001f;
-             errors[1][1] = 0.02f;
-             break;
-           case 1:
-diff --git a/modules/rgbd/test/test_odometry.cpp 
b/modules/rgbd/test/test_odometry.cpp
-index 62b654a1ec..f5a2084504 100644
---- a/modules/rgbd/test/test_odometry.cpp
-+++ b/modules/rgbd/test/test_odometry.cpp
-@@ -213,7 +213,7 @@ void CV_OdometryTest::generateRandomTransformation(Mat& 
rvec, Mat& tvec)
-     normalize(rvec, rvec, rng.uniform(0.007f, maxRotation));
- 
-     randu(tvec, Scalar(-1000), Scalar(1000));
--    normalize(tvec, tvec, rng.uniform(0.007f, maxTranslation));
-+    normalize(tvec, tvec, rng.uniform(0.008f, maxTranslation));
- }
- 
- void CV_OdometryTest::run(int)