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branch master updated: gnu: Add r-scopeloomr.

From: guix-commits
Subject: branch master updated: gnu: Add r-scopeloomr.
Date: Wed, 09 Mar 2022 06:33:35 -0500

This is an automated email from the git hooks/post-receive script.

rekado pushed a commit to branch master
in repository guix.

The following commit(s) were added to refs/heads/master by this push:
     new ca588fdfde gnu: Add r-scopeloomr.
ca588fdfde is described below

commit ca588fdfde849994cc7d399dc9d860ad06332a3e
Author: Ricardo Wurmus <>
AuthorDate: Wed Mar 9 11:35:35 2022 +0100

    gnu: Add r-scopeloomr.
    * gnu/packages/bioinformatics.scm (r-scopeloomr): New variable.
 gnu/packages/bioinformatics.scm | 29 +++++++++++++++++++++++++++++
 1 file changed, 29 insertions(+)

diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 6db75f143f..ada5965e5f 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -13883,6 +13883,35 @@ vast-tools, an RNA-Seq pipeline for alternative 
splicing analysis.  The plots
 are generated using @code{ggplot2}.")
     (license license:expat)))
+(define-public r-scopeloomr
+  (let ((commit "99726f5f7da794042036b73924b6a10d6e7b4d5d")
+        (revision "1"))
+    (package
+      (name "r-scopeloomr")
+      (version (git-version "0.13.0" revision commit))
+      (source
+       (origin
+         (method git-fetch)
+         (uri (git-reference
+               (url "";)
+               (commit commit)))
+         (file-name (git-file-name name version))
+         (sha256
+          (base32 "1ci17ms0c0hf7yfp9ckcg7a2y1s0nm19jj3cifsd55hwc0gdglmz"))))
+      (properties `((upstream-name . "SCopeLoomR")))
+      (build-system r-build-system)
+      (propagated-inputs
+       (list r-base64enc r-hdf5r r-igraph r-matrix r-plyr r-rjson r-rlist))
+      (home-page "";)
+      (synopsis "Build .loom files and extract data from them")
+      (description
+       "This is an R package to build generic @code{.loom} files aligning with
+the default naming convention of the @code{.loom} format and to integrate
+other data types e.g.: regulons (SCENIC), clusters from Seurat, trajectory
+information...  The package can also be used to extract data from @code{.loom}
+      (license license:expat))))
 (define-public vbz-compression
     (name "vbz-compression")

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