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branch master updated: gnu: Add r-acgh.


From: guix-commits
Subject: branch master updated: gnu: Add r-acgh.
Date: Thu, 14 Apr 2022 06:00:45 -0400

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rekado pushed a commit to branch master
in repository guix.

The following commit(s) were added to refs/heads/master by this push:
     new 08df30f232 gnu: Add r-acgh.
08df30f232 is described below

commit 08df30f232afc1fc1ae7fb3c9889b5ad96bc5dea
Author: Mădălin Ionel Patrașcu <madalinionel.patrascu@mdc-berlin.de>
AuthorDate: Wed Apr 13 14:21:38 2022 +0200

    gnu: Add r-acgh.
    
    * gnu/packages/bioconductor.scm (r-acgh): New variable.
    
    Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
---
 gnu/packages/bioconductor.scm | 24 ++++++++++++++++++++++++
 1 file changed, 24 insertions(+)

diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index bae472c8ac..d3e16cd859 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -11637,6 +11637,30 @@ segments fit (the relative error) to integer copy 
numbers for each percentage
 of @dfn{tumor cells} (cells with divergent segments).")
     (license license:gpl2)))
 
+(define-public r-acgh
+  (package
+    (name "r-acgh")
+    (version "1.72.0")
+    (source (origin
+              (method url-fetch)
+              (uri (bioconductor-uri "aCGH" version))
+              (sha256
+               (base32
+                "1r1q6iq3g7svfn5m4jxlxp413djb40mvf6lh595y86sgwav5k6l4"))))
+    (properties `((upstream-name . "aCGH")))
+    (build-system r-build-system)
+    (propagated-inputs (list r-biobase r-cluster r-multtest r-survival))
+    (home-page "https://bioconductor.org/packages/aCGH";)
+    (synopsis
+     "Classes and functions for array comparative genomic hybridization data")
+    (description
+     "This package provides functions for reading
+@dfn{array comparative genomic hybridization} (aCGH) data from image analysis
+output files and clone information files, creation of @code{aCGH} objects for
+storing these data.  Basic methods are accessing/replacing, subsetting,
+printing and plotting @code{aCGH} objects.")
+    (license license:gpl2)))
+
 ;; This is a CRAN package, but it depends on Bioconductor packages, so we put
 ;; it here.
 (define-public r-activedriverwgs



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