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161/233: gnu: python-pynndescent: Update to 0.5.6.
From: |
guix-commits |
Subject: |
161/233: gnu: python-pynndescent: Update to 0.5.6. |
Date: |
Sun, 24 Apr 2022 23:39:58 -0400 (EDT) |
apteryx pushed a commit to branch wip-ipython-polyglossia
in repository guix.
commit ecf3d4fe85879c53bc7fb323b38402d269952dc6
Author: Maxim Cournoyer <maxim.cournoyer@gmail.com>
AuthorDate: Mon Apr 18 17:43:43 2022 -0400
gnu: python-pynndescent: Update to 0.5.6.
* gnu/packages/machine-learning.scm (python-pynndescent): Update to 0.5.6.
[phases]{check}: Skip the test_weighted_minkowski test.
[native-inputs, propagated-inputs]: Re-indent.
---
gnu/packages/machine-learning.scm | 18 +++++++++++-------
1 file changed, 11 insertions(+), 7 deletions(-)
diff --git a/gnu/packages/machine-learning.scm
b/gnu/packages/machine-learning.scm
index b765257d98..5f14453f01 100644
--- a/gnu/packages/machine-learning.scm
+++ b/gnu/packages/machine-learning.scm
@@ -1210,13 +1210,13 @@ for scientific computing and data science (e.g. BLAS
and OpenMP).")
(define-public python-pynndescent
(package
(name "python-pynndescent")
- (version "0.5.5")
+ (version "0.5.6")
(source
(origin
(method url-fetch)
(uri (pypi-uri "pynndescent" version))
(sha256
- (base32 "10pqqqc3jkpw03cyzy04slxmpgyhqnlgbyk0c1cv7kqr5d0zhzbs"))))
+ (base32 "0p3jsdcprjfzz7qf5674dsqfpvdn6p4wgqikg7b6ki5abf433yv1"))))
(build-system python-build-system)
(arguments
`(#:phases
@@ -1224,12 +1224,16 @@ for scientific computing and data science (e.g. BLAS
and OpenMP).")
(replace 'check
(lambda* (#:key inputs outputs tests? #:allow-other-keys)
(when tests?
- (add-installed-pythonpath inputs outputs)
- (invoke "python" "-m" "pytest" "--pyargs" "pynndescent")))))))
- (native-inputs
- (list python-pytest))
+ (invoke "python" "-m" "pytest" "--pyargs" "pynndescent"
+ ;; wminkowski no longer exists in scipy 1.8.0 (see:
+ ;; https://github.com/lmcinnes/pynndescent/issues/177)
+ "-k" "not test_weighted_minkowski")))))))
+ (native-inputs (list python-pytest))
(propagated-inputs
- (list python-joblib python-llvmlite python-numba python-scikit-learn
+ (list python-joblib
+ python-llvmlite
+ python-numba
+ python-scikit-learn
python-scipy))
(home-page "https://github.com/lmcinnes/pynndescent")
(synopsis "Nearest neighbor descent for approximate nearest neighbors")
- 215/233: gnu: python-pydata-sphinx-theme: Update to 0.7.2., (continued)
- 215/233: gnu: python-pydata-sphinx-theme: Update to 0.7.2., guix-commits, 2022/04/24
- 216/233: gnu: python-sphinx-copybutton: Update to 0.5.0., guix-commits, 2022/04/24
- 218/233: gnu: python-sphinxcontrib-websupport: Update to 1.2.4., guix-commits, 2022/04/24
- 223/233: gnu: Add python-nptyping., guix-commits, 2022/04/24
- 226/233: gnu: python-sphinx-rtd-theme: Update to 1.0.0., guix-commits, 2022/04/24
- 229/233: gnu: python-pudb: Update to 2022.1.1 and rename from pudb., guix-commits, 2022/04/24
- 233/233: gnu: python-matplotlib-documentation: Fix build., guix-commits, 2022/04/24
- 152/233: gnu: Add python-openapi-core., guix-commits, 2022/04/24
- 154/233: gnu: python-hypothesis-6.23: Update to 6.43.3., guix-commits, 2022/04/24
- 155/233: gnu: python-numpy: Update to 1.21.6 and parallelize build/tests., guix-commits, 2022/04/24
- 161/233: gnu: python-pynndescent: Update to 0.5.6.,
guix-commits <=
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- 160/233: gnu: python-scikit-learn: Parallelize build and test suite., guix-commits, 2022/04/24