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branch master updated: gnu: Add python-cellbender.
From: |
guix-commits |
Subject: |
branch master updated: gnu: Add python-cellbender. |
Date: |
Sat, 09 Jul 2022 04:38:14 -0400 |
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rekado pushed a commit to branch master
in repository guix.
The following commit(s) were added to refs/heads/master by this push:
new d84bedd830 gnu: Add python-cellbender.
d84bedd830 is described below
commit d84bedd830ddc4e108f536ffbe91bd2315e3bd99
Author: Ricardo Wurmus <rekado@elephly.net>
AuthorDate: Sat Jul 9 10:37:22 2022 +0200
gnu: Add python-cellbender.
* gnu/packages/bioinformatics.scm (python-cellbender): New variable.
---
gnu/packages/bioinformatics.scm | 38 ++++++++++++++++++++++++++++++++++++++
1 file changed, 38 insertions(+)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 525509f56d..325c159df1 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -806,6 +806,44 @@ input/output delimiter. When the new functionality is not
used, bioawk is
intended to behave exactly the same as the original BWK awk.")
(license license:x11)))
+(define-public python-cellbender
+ (package
+ (name "python-cellbender")
+ (version "0.2.1")
+ (source
+ (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/broadinstitute/CellBender")
+ (commit (string-append "v" version))))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32
+ "1zav2q8nnss80i25y06fccagkvrqsy7lpylsl4dxv4qkj8p4fnv3"))))
+ (build-system python-build-system)
+ (arguments
+ (list #:tests? #false)) ;there are none
+ (propagated-inputs
+ (list python-anndata
+ python-matplotlib
+ python-numpy
+ python-pandas
+ python-pyro-ppl
+ python-scikit-learn
+ python-scipy
+ python-sphinx
+ python-sphinx-argparse
+ python-sphinx-autodoc-typehints
+ python-sphinx-rtd-theme
+ python-sphinxcontrib-programoutput
+ python-tables))
+ (home-page "https://cellbender.rtfd.io/")
+ (synopsis "Eliminate technical artifacts from single-cell RNA-seq data")
+ (description
+ "CellBender is a software package for eliminating technical artifacts
+from high-throughput single-cell RNA sequencing (scRNA-seq) data.")
+ (license license:bsd-3)))
+
(define-public python-htsget
(package
(name "python-htsget")
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