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01/02: gnu: Add r-fishpond.
From: |
guix-commits |
Subject: |
01/02: gnu: Add r-fishpond. |
Date: |
Thu, 27 Oct 2022 09:25:20 -0400 (EDT) |
rekado pushed a commit to branch master
in repository guix.
commit f180a5990b133790fbf7f60fb9c9ea4f8fa98f08
Author: Mădălin Ionel Patrașcu <madalinionel.patrascu@mdc-berlin.de>
AuthorDate: Fri Oct 14 19:01:42 2022 +0200
gnu: Add r-fishpond.
* gnu/packages/bioconductor.scm (r-fishpond): New variable.
---
gnu/packages/bioconductor.scm | 38 ++++++++++++++++++++++++++++++++++++++
1 file changed, 38 insertions(+)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index b323541f82..65df5d1f11 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -14585,6 +14585,44 @@ data manipulation and visualization.")
objects from the @code{graph} package.")
(license license:epl1.0)))
+(define-public r-fishpond
+ (package
+ (name "r-fishpond")
+ (version "2.2.0")
+ (source (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "fishpond" version))
+ (sha256
+ (base32
+ "0svp4yh0srhzbbxy1grchzdd9yzchadjp3d2sy2n9xpwxzpkhrym"))))
+ (properties `((upstream-name . "fishpond")))
+ (build-system r-build-system)
+ (inputs (list zlib))
+ (propagated-inputs
+ (list r-abind
+ r-genomicranges
+ r-gtools
+ r-iranges
+ r-jsonlite
+ r-matrix
+ r-matrixstats
+ r-qvalue
+ r-rcpp
+ r-s4vectors
+ r-singlecellexperiment
+ r-summarizedexperiment
+ r-svmisc))
+ (native-inputs (list r-knitr))
+ (home-page "https://github.com/mikelove/fishpond")
+ (synopsis "Downstream methods and tools for expression data")
+ (description
+ "The @code{fishpond} package contains methods for differential transcript
+and gene expression analysis of RNA-seq data using inferential replicates for
+uncertainty of abundance quantification, as generated by Gibbs sampling or
+bootstrap sampling. Also the package contains a number of utilities for
+working with Salmon and Alevin quantification files.")
+ (license license:gpl2)))
+
(define-public r-fithic
(package
(name "r-fithic")