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05/05: gnu: Add r-barcodetrackr.
From: |
guix-commits |
Subject: |
05/05: gnu: Add r-barcodetrackr. |
Date: |
Thu, 27 Oct 2022 10:00:31 -0400 (EDT) |
rekado pushed a commit to branch master
in repository guix.
commit 38cc09493c59da72b2858a3ee0bd5443b5e7af52
Author: Mădălin Ionel Patrașcu <madalinionel.patrascu@mdc-berlin.de>
AuthorDate: Tue Jun 28 17:00:44 2022 +0200
gnu: Add r-barcodetrackr.
* gnu/packages/bioconductor.scm (r-barcodetrackr): New variable.
---
gnu/packages/bioconductor.scm | 42 ++++++++++++++++++++++++++++++++++++++++++
1 file changed, 42 insertions(+)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index c7d759d15b..65f4debbac 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -2564,6 +2564,48 @@ using a Bayesian model coded with @code{rstan}. It
provides as output the
estimates for each correlation element.")
(license license:expat)))
+(define-public r-barcodetrackr
+ (package
+ (name "r-barcodetrackr")
+ (version "1.4.0")
+ (source (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "barcodetrackR" version))
+ (sha256
+ (base32
+ "0yxa15xkgqazw31vq4wm8v747bw4qb18m6i602pvynk0n5bgg3d3"))))
+ (properties `((upstream-name . "barcodetrackR")))
+ (build-system r-build-system)
+ (propagated-inputs
+ (list r-circlize
+ r-cowplot
+ r-dplyr
+ r-ggdendro
+ r-ggplot2
+ r-ggridges
+ r-magrittr
+ r-plyr
+ r-proxy
+ r-rcolorbrewer
+ r-rlang
+ r-s4vectors
+ r-scales
+ r-shiny
+ r-summarizedexperiment
+ r-tibble
+ r-tidyr
+ r-vegan
+ r-viridis))
+ (native-inputs (list r-knitr))
+ (home-page "https://github.com/dunbarlabNIH/barcodetrackR")
+ (synopsis "Functions for analyzing cellular barcoding data")
+ (description
+ "This package is developed for the analysis and visualization of clonal
+tracking data. The required data is formed by samples and tag abundances in
+matrix form, usually from cellular barcoding experiments, integration site
+retrieval analyses, or similar technologies.")
+ (license license:cc0)))
+
(define-public r-biocversion
(package
(name "r-biocversion")