[Date Prev][Date Next][Thread Prev][Thread Next][Date Index][Thread Index]
branch master updated: gnu: flair: Add missing R packages.
From: |
guix-commits |
Subject: |
branch master updated: gnu: flair: Add missing R packages. |
Date: |
Thu, 27 Oct 2022 12:22:13 -0400 |
This is an automated email from the git hooks/post-receive script.
rekado pushed a commit to branch master
in repository guix.
The following commit(s) were added to refs/heads/master by this push:
new 176a501360 gnu: flair: Add missing R packages.
176a501360 is described below
commit 176a501360699581b49f19ffde1ea3bb6285b8be
Author: Ricardo Wurmus <rekado@elephly.net>
AuthorDate: Thu Oct 27 18:19:48 2022 +0200
gnu: flair: Add missing R packages.
* gnu/packages/bioinformatics.scm (flair)[propagated-inputs]: Add
python-rpy2.
[inputs]: Add r-minimal, r-deseq2, r-drimseq, r-ggplot2, r-lazyeval,
r-qqman,
and r-rlang.
[arguments]: Add phase "wrap-executable".
---
gnu/packages/bioinformatics.scm | 19 ++++++++++++++++++-
1 file changed, 18 insertions(+), 1 deletion(-)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index d431e467ed..fd110ab960 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -17043,13 +17043,30 @@ module capable of computing base-level alignments for
very large sequences.")
(lambda _
(apply invoke "pip" "--no-cache-dir" "--no-input"
"install" "--no-deps" "--prefix" #$output
- (find-files "dist" "\\.whl$")))))))
+ (find-files "dist" "\\.whl$"))))
+ (add-after 'install 'wrap-executable
+ (lambda _
+ (for-each
+ (lambda (script)
+ (wrap-program script
+ `("R_LIBS_SITE" ":" = (,(getenv "R_LIBS_SITE")))))
+ (find-files (string-append #$output "/bin"))))))))
(propagated-inputs
(list python-mappy
python-ncls
python-pybedtools
python-pysam
+ python-rpy2
python-tqdm))
+ ;; Used by rpy2
+ (inputs
+ (list r-minimal ;for R_LIBS_SITE
+ r-deseq2 ;for runDE
+ r-drimseq ;for runDS
+ r-ggplot2 ;runDS, runDU
+ r-lazyeval ;for rpy2
+ r-qqman ;for runDE
+ r-rlang)) ;for rpy2
(native-inputs
(list python-pypa-build python-setuptools))
(home-page "https://flair.readthedocs.io/en/latest/")
[Prev in Thread] |
Current Thread |
[Next in Thread] |
- branch master updated: gnu: flair: Add missing R packages.,
guix-commits <=