guix-commits
[Top][All Lists]
Advanced

[Date Prev][Date Next][Thread Prev][Thread Next][Date Index][Thread Index]

branch master updated: gnu: Add r-microbiome.


From: guix-commits
Subject: branch master updated: gnu: Add r-microbiome.
Date: Fri, 04 Nov 2022 10:32:31 -0400

This is an automated email from the git hooks/post-receive script.

rekado pushed a commit to branch master
in repository guix.

The following commit(s) were added to refs/heads/master by this push:
     new 04f8295f6f gnu: Add r-microbiome.
04f8295f6f is described below

commit 04f8295f6f91d8a5c75a212fc4b0a5174d89b996
Author: Mădălin Ionel Patrașcu <madalinionel.patrascu@mdc-berlin.de>
AuthorDate: Sun Jun 19 22:42:00 2022 +0200

    gnu: Add r-microbiome.
    
    * gnu/packages/bioconductor.scm (r-microbiome): New variable.
---
 gnu/packages/bioconductor.scm | 37 +++++++++++++++++++++++++++++++++++++
 1 file changed, 37 insertions(+)

diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index cb9feda347..f3b67fd2bf 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -9736,6 +9736,43 @@ to identify differentially methylated regions in 
epigenetic epidemiology
 studies.")
     (license license:artistic2.0)))
 
+(define-public r-microbiome
+  (package
+    (name "r-microbiome")
+    (version "1.18.0")
+    (source (origin
+              (method url-fetch)
+              (uri (bioconductor-uri "microbiome" version))
+              (sha256
+               (base32
+                "1z9arkjp5xszlg07mzb4p163i74jfbd9p4gbwv5syivnpl040k12"))))
+    (properties `((upstream-name . "microbiome")))
+    (build-system r-build-system)
+    (propagated-inputs
+     (list r-biostrings
+           r-compositions
+           r-dplyr
+           r-ggplot2
+           r-phyloseq
+           r-reshape2
+           r-rtsne
+           r-scales
+           r-tibble
+           r-tidyr
+           r-vegan))
+    (native-inputs (list r-knitr))
+    (home-page "https://microbiome.github.io/microbiome/";)
+    (synopsis "Tools for microbiome analysis")
+    (description
+     "This package facilitates phyloseq exploration and analysis of taxonomic
+profiling data.  This package provides tools for the manipulation, statistical
+analysis, and visualization of taxonomic profiling data.  In addition to
+targeted case-control studies, microbiome facilitates scalable exploration of
+population cohorts.  This package supports the independent phyloseq data
+format and expands the available toolkit in order to facilitate the
+standardization of the analyses and the development of best practices.")
+    (license license:bsd-2)))
+
 (define-public r-milor
   (package
     (name "r-milor")



reply via email to

[Prev in Thread] Current Thread [Next in Thread]