01/02: gnu: Add python-genomic-regions.

[guix-commits]

rekado pushed a commit to branch master
in repository guix.

commit ee069ec6516aa1e73a582a56718943246e550bf9
Author: Ricardo Wurmus <rekado@elephly.net>
AuthorDate: Fri Dec 2 17:20:54 2022 +0100

    gnu: Add python-genomic-regions.
    
    * gnu/packages/bioinformatics.scm (python-genomic-regions): New variable.
    
    Co-authored-by: Navid Afkhami <navid.afkhami@mdc-berlin.de>
---
 gnu/packages/bioinformatics.scm | 32 ++++++++++++++++++++++++++++++++
 1 file changed, 32 insertions(+)

diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 6c6ff3e25a..78ce670ea6 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -57,6 +57,7 @@
   #:use-module (guix build-system meson)
   #:use-module (guix build-system ocaml)
   #:use-module (guix build-system perl)
+  #:use-module (guix build-system pyproject)
   #:use-module (guix build-system python)
   #:use-module (guix build-system qt)
   #:use-module (guix build-system r)
@@ -10601,6 +10602,37 @@ traditional read alignments) and massively-parallel 
stochastic collapsed
 variational inference.")
     (license license:gpl3+)))
 
+(define-public python-genomic-regions
+  (package
+    (name "python-genomic-regions")
+    (version "0.0.10")
+    (source (origin
+              (method url-fetch)
+              (uri (pypi-uri "genomic_regions" version))
+              (sha256
+               (base32
+                "0hz811iyd1prml1r90qyzimmwyjwycwkjqw4vnl12bxy61rfzjz5"))))
+    (build-system pyproject-build-system)
+    (propagated-inputs
+     (list python-future
+           python-intervaltree
+           python-numpy
+           python-pandas
+           python-pybedtools
+           python-pybigwig
+           python-pytest
+           python-msgpack-numpy
+           python-cython
+           python-msgpack
+           python-pysam))
+    (home-page "https://pypi.org/project/genomic-regions/";)
+    (synopsis "Consistently handle genomic regions")
+    (description "This package aims to simplify working with genomic region /
+interval data by providing a common interface that lets you access a wide
+selection of file types and formats for handling genomic region data---all
+using the same syntax.")
+    (license license:expat)))
+
 (define-public python-loompy
   (package
     (name "python-loompy")