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09/11: gnu: bioawk: Use gexp.
From: |
guix-commits |
Subject: |
09/11: gnu: bioawk: Use gexp. |
Date: |
Tue, 13 Dec 2022 10:34:12 -0500 (EST) |
rekado pushed a commit to branch master
in repository guix.
commit de30c74b639c8739263973d0e49344b727b2c163
Author: Ricardo Wurmus <rekado@elephly.net>
AuthorDate: Tue Dec 13 15:59:21 2022 +0100
gnu: bioawk: Use gexp.
* gnu/packages/bioinformatics.scm (bioawk)[arguments]: Use gexp and simplify
'install phase.
---
gnu/packages/bioinformatics.scm | 35 ++++++++++++++++-------------------
1 file changed, 16 insertions(+), 19 deletions(-)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index f07938d42f..f9a51910d9 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -802,26 +802,23 @@ provides the Ribotaper pipeline.")
(base32
"1pxc3zdnirxbf9a0az698hd8xdik7qkhypm7v6hn922x8y9qmspm"))))
(build-system gnu-build-system)
- (inputs
- (list zlib))
- (native-inputs
- (list bison))
+ (inputs (list zlib))
+ (native-inputs (list bison))
(arguments
- `(#:tests? #f ; There are no tests to run.
- ;; Bison must generate files, before other targets can build.
- #:parallel-build? #f
- #:phases
- (modify-phases %standard-phases
- (delete 'configure) ; There is no configure phase.
- (replace 'install
- (lambda* (#:key outputs #:allow-other-keys)
- (let* ((out (assoc-ref outputs "out"))
- (bin (string-append out "/bin"))
- (man (string-append out "/share/man/man1")))
- (mkdir-p man)
- (copy-file "awk.1" (string-append man "/bioawk.1"))
- (install-file "bioawk" bin))
- #t)))))
+ (list
+ #:tests? #f ; There are no tests to run.
+ ;; Bison must generate files, before other targets can build.
+ #:parallel-build? #f
+ #:phases
+ #~(modify-phases %standard-phases
+ (delete 'configure) ; There is no configure phase.
+ (replace 'install
+ (lambda _
+ (let ((bin (string-append #$output "/bin"))
+ (man (string-append #$output "/share/man/man1")))
+ (mkdir-p man)
+ (copy-file "awk.1" (string-append man "/bioawk.1"))
+ (install-file "bioawk" bin)))))))
(home-page "https://github.com/lh3/bioawk")
(synopsis "AWK with bioinformatics extensions")
(description "Bioawk is an extension to Brian Kernighan's awk, adding the
- branch master updated (93b0c1e35e -> 23322c2de8), guix-commits, 2022/12/13
- 01/11: gnu: aragorn: Update to 1.2.41., guix-commits, 2022/12/13
- 04/11: gnu: bedtools: Remove unnecessary quasiquotation., guix-commits, 2022/12/13
- 07/11: gnu: pbbam: Drop input labels., guix-commits, 2022/12/13
- 06/11: gnu: pbbam: Update to 2.1.0., guix-commits, 2022/12/13
- 09/11: gnu: bioawk: Use gexp.,
guix-commits <=
- 10/11: gnu: python-bx-python: Update to 0.9.0., guix-commits, 2022/12/13
- 02/11: gnu: bamtools: Update to 2.5.2., guix-commits, 2022/12/13
- 03/11: gnu: bamutils: Update to 1.0.15., guix-commits, 2022/12/13
- 05/11: gnu: pbcopper: Update to 2.0.0., guix-commits, 2022/12/13
- 11/11: gnu: tophat: Remove trailing #T from build phases and snippet., guix-commits, 2022/12/13
- 08/11: gnu: blasr-libcpp: Remove trailing #T from build phases., guix-commits, 2022/12/13