[Date Prev][Date Next][Thread Prev][Thread Next][Date Index][Thread Index]
branch master updated: gnu: Add wiggletools.
From: |
guix-commits |
Subject: |
branch master updated: gnu: Add wiggletools. |
Date: |
Thu, 22 Dec 2022 04:30:01 -0500 |
This is an automated email from the git hooks/post-receive script.
rekado pushed a commit to branch master
in repository guix.
The following commit(s) were added to refs/heads/master by this push:
new 2a4930a1e6 gnu: Add wiggletools.
2a4930a1e6 is described below
commit 2a4930a1e6d15a835bcd3db016ce09b197efe372
Author: Ricardo Wurmus <rekado@elephly.net>
AuthorDate: Thu Dec 22 10:25:09 2022 +0100
gnu: Add wiggletools.
* gnu/packages/bioinformatics.scm (wiggletools): New variable.
---
gnu/packages/bioinformatics.scm | 41 +++++++++++++++++++++++++++++++++++++++++
1 file changed, 41 insertions(+)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 160c44df98..b2c4f98531 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -17637,6 +17637,47 @@ module capable of computing base-level alignments for
very large sequences.")
(home-page "https://github.com/ekg/wfmash")
(license license:expat)))
+(define-public wiggletools
+ (package
+ (name "wiggletools")
+ (version "1.2.11")
+ (source
+ (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/Ensembl/WiggleTools/")
+ (commit (string-append "v" version))))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32
+ "1g3qla4l1g583nzlgyww5jqxpq87ndpn9cmjls098bgqjyn5292q"))))
+ (build-system gnu-build-system)
+ (arguments
+ (list
+ ;; Tests require internet access
+ #:tests? #false
+ #:make-flags
+ #~(list "Wiggletools"
+ (string-append "CC=" #$(cc-for-target)))
+ #:phases
+ #~(modify-phases %standard-phases
+ (delete 'configure)
+ (replace 'install
+ (lambda _
+ (install-file "bin/wiggletools"
+ (string-append #$output "/bin")))))))
+ (inputs
+ (list curl ; XXX: needed by libbigwig
+ htslib libbigwig gsl xz zlib))
+ (home-page "https://github.com/Ensembl/WiggleTools/")
+ (synopsis "Operations on the space of numerical functions defined on the
genome")
+ (description "The WiggleTools package allows genomewide data files to be
+manipulated as numerical functions, equipped with all the standard functional
+analysis operators (sum, product, product by a scalar, comparators), and
+derived statistics (mean, median, variance, stddev, t-test, Wilcoxon's rank
+sum test, etc).")
+ (license license:asl2.0)))
+
(define-public flair
(package
(name "flair")
[Prev in Thread] |
Current Thread |
[Next in Thread] |
- branch master updated: gnu: Add wiggletools.,
guix-commits <=