branch master updated: gnu: Add paraview.

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The following commit(s) were added to refs/heads/master by this push:
     new fc5dc3e047 gnu: Add paraview.
fc5dc3e047 is described below

commit fc5dc3e04789a15d80a7b35987adaefc1a94b97c
Author: Paul A. Patience <paul@apatience.com>
AuthorDate: Thu Sep 8 15:24:06 2022 +0000

    gnu: Add paraview.
    
    * gnu/packages/graphics.scm (paraview): New variable.
    
    Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
---
 gnu/packages/image-processing.scm | 277 ++++++++++++++++++++++++++++++++++++++
 1 file changed, 277 insertions(+)

diff --git a/gnu/packages/image-processing.scm 
b/gnu/packages/image-processing.scm
index ab796d7719..85acc3f5b5 100644
--- a/gnu/packages/image-processing.scm
+++ b/gnu/packages/image-processing.scm
@@ -21,6 +21,7 @@
 ;;; Copyright © 2021 Ivan Gankevich <i.gankevich@spbu.ru>
 ;;; Copyright © 2022 Maxim Cournoyer <maxim.cournoyer@gmail.com>
 ;;; Copyright © 2022 Tomasz Jeneralczyk <tj@schwi.pl>
+;;; Copyright © 2022 Paul A. Patience <paul@apatience.com>
 ;;;
 ;;; This file is part of GNU Guix.
 ;;;
@@ -60,6 +61,8 @@
   #:use-module (gnu packages documentation)
   #:use-module (gnu packages flex)
   #:use-module (gnu packages fontutils)
+  #:use-module (gnu packages game-development)
+  #:use-module (gnu packages gcc)
   #:use-module (gnu packages geo)
   #:use-module (gnu packages ghostscript)
   #:use-module (gnu packages gimp)
@@ -75,16 +78,21 @@
   #:use-module (gnu packages imagemagick)
   #:use-module (gnu packages linux)
   #:use-module (gnu packages maths)
+  #:use-module (gnu packages mpi)
   #:use-module (gnu packages pdf)
   #:use-module (gnu packages perl)
   #:use-module (gnu packages photo)
   #:use-module (gnu packages pkg-config)
+  #:use-module (gnu packages pretty-print)
   #:use-module (gnu packages protobuf)
   #:use-module (gnu packages python)
   #:use-module (gnu packages python-check)
+  #:use-module (gnu packages python-science)
   #:use-module (gnu packages python-xyz)
   #:use-module (gnu packages qt)
+  #:use-module (gnu packages sdl)
   #:use-module (gnu packages serialization)
+  #:use-module (gnu packages sphinx)
   #:use-module (gnu packages sqlite)
   #:use-module (gnu packages tbb)
   #:use-module (gnu packages textutils)
@@ -958,6 +966,275 @@ and quantitative techniques.  The data exploration can be 
done interactively
 in 3D or programmatically using ParaView’s batch processing capabilities.")
     (license license:bsd-3)))
 
+(define-public paraview
+  (package
+    (name "paraview")
+    (version "5.11.0")
+    (source
+     (origin
+       (method git-fetch)
+       (uri (git-reference
+             (url "https://gitlab.kitware.com/paraview/paraview.git";)
+             (commit (string-append "v" version))
+             (recursive? #t)))
+       (file-name (git-file-name name version))
+       (sha256
+        (base32 "0qifzsbgg8f7zvg5a4934nql6nv5b6sm1f59bylyc6v5bqd0myas"))
+       (modules '((guix build utils)))
+       (snippet
+        ;; TODO: Also remove unused bundled libraries and plugins?
+        #~(begin
+            ;; Remove bundled ParaView libraries which are available in Guix
+            ;; or undesired.
+            (for-each (lambda (dir)
+                        (delete-file-recursively
+                         (string-append "ThirdParty/" dir "/vtk"
+                                        (string-downcase dir))))
+                      '(;;"CosmoHaloFinder"
+                        ;;"IceT"
+                        "NvPipe"        ; Don't want NvPipe support
+                        ;;"QtTesting"
+                        ;;"cinema"
+                        ;;"cinemasci"
+                        "protobuf"))
+            ;; Remove undesired ParaView plugins.
+            (delete-file-recursively "Plugins/pvNVIDIAIndeX")
+            ;; Remove bundled VTK libraries which are available in Guix.
+            (for-each (lambda (dir)
+                        (delete-file-recursively
+                         (string-append "VTK/ThirdParty/" dir "/vtk" dir)))
+                      '(;;"cgns"
+                        "cli11"
+                        ;;"diy2"
+                        "doubleconversion"
+                        "eigen"
+                        ;;"exodusII"
+                        "expat"
+                        ;;"exprtk"
+                        ;;"fides"
+                        "fmt"
+                        "freetype"
+                        "gl2ps"
+                        "glew"
+                        ;;"h5part"
+                        "hdf5"
+                        ;;"ioss"
+                        "jpeg"
+                        "jsoncpp"
+                        ;;"kissfft"
+                        ;;"libharu" ; Requires some PRs applied to 2.3.0
+                        "libproj"
+                        "libxml2"
+                        ;;"loguru"
+                        "lz4"
+                        "lzma"
+                        "mpi4py"
+                        "netcdf"
+                        ;;"nlohmannjson" ; ParFlow build fails even with 
bundled
+                        "ogg"
+                        ;;"pegtl"
+                        "png"
+                        "pugixml"
+                        "sqlite"
+                        "theora"
+                        "tiff"
+                        "utf8"
+                        ;;"verdict"
+                        ;;"vpic"
+                        ;;"vtkm"
+                        ;;"xdmf2"
+                        ;;"xdmf3"
+                        ;;"zfp"
+                        "zlib"))))))
+    (build-system qt-build-system)
+    (arguments
+     (list
+      #:build-type "Release"            ; 542 MiB in release mode
+      #:tests? #f                       ; Downloads test data
+      #:configure-flags
+      #~(let ((doc (string-append #$output "/share/doc/" #$name "-" 
#$version)))
+          (list
+           (string-append "-DCMAKE_INSTALL_DOCDIR=" doc) ; For paraview.qch
+
+           ;; ParaView build options
+           "-DPARAVIEW_BUILD_DEVELOPER_DOCUMENTATION=ON"
+           (string-append 
"-DPARAVIEW_GENERATED_DOCUMENTATION_OUTPUT_DIRECTORY=" doc)
+
+           ;; ParaView capability options
+           ;;"-DPARAVIEW_USE_EXTERNAL_VTK=ON" ; Unsupported by ParaView
+           "-DPARAVIEW_USE_MPI=ON"
+           "-DPARAVIEW_USE_PYTHON=ON"
+           "-DPARAVIEW_USE_QTWEBENGINE=ON"
+
+           ;; ParaView features
+           ;;
+           ;; Enable those that are disabled by default.
+           ;; Commented means the dependencies are missing from Guix
+           ;; (or are otherwise described).
+           ;;"-DPARAVIEW_ENABLE_ADIOS2=ON"
+           ;;"-DPARAVIEW_ENABLE_COSMOTOOLS=ON"
+           ;;"-DPARAVIEW_ENABLE_CATALYST=ON"
+           "-DPARAVIEW_ENABLE_FFMPEG=ON"
+           ;;"-DPARAVIEW_ENABLE_FIDES=ON"
+           "-DPARAVIEW_ENABLE_GDAL=ON"
+           ;;"-DPARAVIEW_ENABLE_LAS=ON"
+           ;;"-DPARAVIEW_ENABLE_LOOKINGGLASS=ON" ; Downloads dependency
+           ;;"-DPARAVIEW_ENABLE_MOMENTINVARIANTS=ON" ; Downloads dependency
+           "-DPARAVIEW_ENABLE_MOTIONFX=ON"
+           ;;"-DPARAVIEW_ENABLE_OPENTURNS=ON"
+           ;;"-DPARAVIEW_ENABLE_OPENVDB=ON" ; Dependency not found
+           ;;"-DPARAVIEW_ENABLE_PDAL=ON"
+           ;;"-DPARAVIEW_ENABLE_RAYTRACING=ON"
+           "-DPARAVIEW_ENABLE_VISITBRIDGE=ON"
+           "-DPARAVIEW_ENABLE_XDMF3=ON"
+
+           ;; ParaView miscellaneous options
+           ;;
+           ;; Without -DPARAVIEW_DATA_EXCLUDE_FROM_ALL=OFF, test data is
+           ;; downloaded even with tests disabled.
+           "-DPARAVIEW_VERSIONED_INSTALL=OFF"
+           "-DPARAVIEW_DATA_EXCLUDE_FROM_ALL=OFF"
+
+           ;; ParaView plugins
+           ;;
+           ;; Enable those that are disabled by default.
+           ;; Commented means the dependencies are missing from Guix
+           ;; (or are otherwise described).
+           ;;"-DPARAVIEW_PLUGIN_ENABLE_AdiosReaderPixie=ON"
+           ;;"-DPARAVIEW_PLUGIN_ENABLE_AdiosReaderStaging=ON"
+           "-DPARAVIEW_PLUGIN_ENABLE_CAVEInteraction=ON"
+           ;;"-DPARAVIEW_PLUGIN_ENABLE_CDIReader=ON"
+           "-DPARAVIEW_PLUGIN_ENABLE_GeographicalMap=ON"
+           "-DPARAVIEW_PLUGIN_ENABLE_GmshIO=ON"
+           "-DPARAVIEW_PLUGIN_ENABLE_InSituExodus=ON"
+           ;;"-DPARAVIEW_PLUGIN_ENABLE_LookingGlass=ON"
+           "-DPARAVIEW_PLUGIN_ENABLE_NetCDFTimeAnnotationPlugin=ON"
+           ;;"-DPARAVIEW_PLUGIN_ENABLE_ParFlow=ON" ; Build fails
+           ;;"-DPARAVIEW_PLUGIN_ENABLE_PythonQtPlugin=ON"
+           "-DPARAVIEW_PLUGIN_ENABLE_SpaceMouseInteractor=ON"
+           ;;"-DPARAVIEW_PLUGIN_ENABLE_VDFReaderPlugin=ON"
+           ;;"-DPARAVIEW_PLUGIN_ENABLE_XRInterface=ON" ; Build fails
+           ;;"-DPARAVIEW_PLUGIN_ENABLE_zSpace=ON"
+
+           ;; VTK options
+           "-DVTK_SMP_IMPLEMENTATION_TYPE=TBB"
+           "-DVTKm_ENABLE_MPI=ON"
+
+           ;; External libraries for ParaView and VTK
+           "-DVTK_MODULE_USE_EXTERNAL_ParaView_protobuf=ON"
+           "-DVTK_MODULE_USE_EXTERNAL_VTK_cli11=ON"
+           "-DVTK_MODULE_USE_EXTERNAL_VTK_doubleconversion=ON"
+           "-DVTK_MODULE_USE_EXTERNAL_VTK_eigen=ON"
+           "-DVTK_MODULE_USE_EXTERNAL_VTK_expat=ON"
+           "-DVTK_MODULE_USE_EXTERNAL_VTK_fmt=ON"
+           "-DVTK_MODULE_USE_EXTERNAL_VTK_freetype=ON"
+           "-DVTK_MODULE_USE_EXTERNAL_VTK_gl2ps=ON"
+           "-DVTK_MODULE_USE_EXTERNAL_VTK_glew=ON"
+           "-DVTK_MODULE_USE_EXTERNAL_VTK_hdf5=ON"
+           "-DVTK_MODULE_USE_EXTERNAL_VTK_jpeg=ON"
+           "-DVTK_MODULE_USE_EXTERNAL_VTK_jsoncpp=ON"
+           "-DVTK_MODULE_USE_EXTERNAL_VTK_libproj=ON"
+           "-DVTK_MODULE_USE_EXTERNAL_VTK_libxml2=ON"
+           "-DVTK_MODULE_USE_EXTERNAL_VTK_lz4=ON"
+           "-DVTK_MODULE_USE_EXTERNAL_VTK_lzma=ON"
+           "-DVTK_MODULE_USE_EXTERNAL_VTK_mpi4py=ON"
+           "-DVTK_MODULE_USE_EXTERNAL_VTK_netcdf=ON"
+           ;;"-DVTK_MODULE_USE_EXTERNAL_VTK_nlohmannjson=ON"
+           "-DVTK_MODULE_USE_EXTERNAL_VTK_ogg=ON"
+           ;;"-DVTK_MODULE_USE_EXTERNAL_VTK_pegtl=ON"
+           "-DVTK_MODULE_USE_EXTERNAL_VTK_png=ON"
+           "-DVTK_MODULE_USE_EXTERNAL_VTK_pugixml=ON"
+           "-DVTK_MODULE_USE_EXTERNAL_VTK_sqlite=ON"
+           "-DVTK_MODULE_USE_EXTERNAL_VTK_theora=ON"
+           "-DVTK_MODULE_USE_EXTERNAL_VTK_tiff=ON"
+           "-DVTK_MODULE_USE_EXTERNAL_VTK_utf8=ON"
+           "-DVTK_MODULE_USE_EXTERNAL_VTK_zlib=ON"))
+      #:phases
+      #~(modify-phases %standard-phases
+          (add-after 'set-paths 'hide-gfortran
+            (lambda _
+              (setenv "CPLUS_INCLUDE_PATH"
+                      (string-join
+                       (delete (string-append #$(this-package-native-input 
"gfortran")
+                                              "/include/c++")
+                               (string-split (getenv "CPLUS_INCLUDE_PATH") 
#\:))
+                       ":"))))
+          (replace 'install-license-files
+            (lambda _
+              (let ((src (string-append #$output "/share/licenses/ParaView"))
+                    (dst (string-append #$output "/share/doc/"
+                                        #$name "-" #$version "/licenses")))
+                (copy-recursively src dst)
+                (delete-file-recursively (dirname src))))))))
+    (native-inputs
+     (list gfortran
+           ;; For the documentation
+           doxygen
+           graphviz
+           perl
+           python-sphinx))
+    (inputs
+     (list boost
+           cli11
+           curl
+           double-conversion
+           eigen
+           expat
+           ffmpeg
+           fmt
+           freetype
+           gdal
+           gl2ps
+           glew
+           gmsh
+           hdf5
+           ;;json-modern-cxx              ;For ParFlow; build fails
+           jsoncpp
+           libjpeg-turbo
+           libogg
+           libpng
+           libtheora
+           libtiff
+           libxcursor
+           libxml2
+           libxt
+           lz4
+           lzip
+           mesa
+           netcdf
+           openmpi
+           ;;openvdb                      ;For OpenVDB; dependency not found
+           ;;openvr                       ;For XRInterface; build fails
+           ;;pegtl                        ;For VTK; build fails
+           proj
+           protobuf
+           pugixml
+           python-cftime
+           python-matplotlib
+           python-mpi4py
+           python-numpy
+           python-wrapper
+           qtbase-5
+           qtdeclarative-5
+           qtmultimedia-5
+           qtsvg-5
+           qttools-5
+           qtwebchannel-5
+           qtwebengine-5
+           qtx11extras
+           qtxmlpatterns
+           sdl2
+           sqlite
+           tbb
+           utfcpp
+           zlib))
+    (home-page "https://www.paraview.org/";)
+    (synopsis "VTK-based, parallel data analyzer and visualizer")
+    (description "ParaView is a VTK-based, parallel data analyzer and
+visualizer which allows exploring data interactively in 3D or
+programmatically.")
+    (license license:bsd-3)))
+
 (define-public vxl
   (package
     (name "vxl")