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01/04: gnu: Add scallop.
From: |
guix-commits |
Subject: |
01/04: gnu: Add scallop. |
Date: |
Wed, 4 Jan 2023 11:38:31 -0500 (EST) |
rekado pushed a commit to branch master
in repository guix.
commit 10e1025c636ebcaf44954602c1b60f096c195490
Author: Ricardo Wurmus <rekado@elephly.net>
AuthorDate: Wed Jan 4 17:14:01 2023 +0100
gnu: Add scallop.
* gnu/packages/bioinformatics.scm (scallop): New variable.
---
gnu/packages/bioinformatics.scm | 22 ++++++++++++++++++++++
1 file changed, 22 insertions(+)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index a92589eef7..fe642bb693 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -10869,6 +10869,28 @@ traditional read alignments) and massively-parallel
stochastic collapsed
variational inference.")
(license license:gpl3+)))
+(define-public scallop
+ (package
+ (name "scallop")
+ (version "0.10.5")
+ (source (origin
+ (method url-fetch)
+ (uri (string-append "https://github.com/Kingsford-Group/scallop"
+ "/releases/download/v" version
+ "/scallop-" version ".tar.gz"))
+ (sha256
+ (base32
+ "0ylkhr5hsmw7bsdszrjz9yqknsijh2fl5n6rjqmdmcdky5hkr7mh"))))
+ (build-system gnu-build-system)
+ (inputs
+ (list boost htslib))
+ (home-page "https://github.com/Kingsford-Group/scallop")
+ (synopsis "Reference-based transcriptome assembler for RNA-seq")
+ (description "Scallop is a reference-based transcript assembler. Scallop
+features its high accuracy in assembling multi-exon transcripts as well as
+lowly expressed transcripts.")
+ (license license:bsd-3)))
+
(define-public python-fanc
(package
(name "python-fanc")