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branch master updated: gnu: Add python-slamdunk.
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guix-commits |
Subject: |
branch master updated: gnu: Add python-slamdunk. |
Date: |
Wed, 25 Jan 2023 09:26:09 -0500 |
This is an automated email from the git hooks/post-receive script.
rekado pushed a commit to branch master
in repository guix.
The following commit(s) were added to refs/heads/master by this push:
new 0d713e0140 gnu: Add python-slamdunk.
0d713e0140 is described below
commit 0d713e0140f4c4a80de6cbfc58fae17cb69beb98
Author: Ricardo Wurmus <rekado@elephly.net>
AuthorDate: Wed Jan 25 15:18:11 2023 +0100
gnu: Add python-slamdunk.
* gnu/packages/bioinformatics.scm (python-slamdunk): New variable.
---
gnu/packages/bioinformatics.scm | 32 ++++++++++++++++++++++++++++++++
1 file changed, 32 insertions(+)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 6cb5ea99eb..cb00842aa1 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -7012,6 +7012,38 @@ Values such as sequence name, sequence description,
sequence quality and the
sequence itself can be retrieved from these databases.")
(license license:bsd-3)))
+(define-public python-slamdunk
+ (package
+ (name "python-slamdunk")
+ (version "0.4.3")
+ (source
+ (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/t-neumann/slamdunk")
+ (commit (string-append "v" version))))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32
+ "0lv3h5k2pn1pz35kz0wk5xmricxzy8qscs2y7nwh0k6x4pn0m0s5"))))
+ (build-system python-build-system)
+ (propagated-inputs
+ (list python-biopython
+ python-intervaltree
+ python-joblib
+ python-pandas
+ python-pybedtools
+ python-pysam))
+ (native-inputs
+ (list python-cython python-pytest))
+ (home-page "https://t-neumann.github.io/slamdunk/")
+ (synopsis "Streamline SLAM-seq analysis with high sensitivity")
+ (description "SlamDunk is a fully automated tool for automated, robust,
+scalable and reproducible SLAMseq data analysis. Diagnostic plotting features
+and a MultiQC plugin will make your SLAMseq data ready for immediate QA and
+interpretation.")
+ (license license:agpl3+)))
+
(define-public python-taggd
(package
(name "python-taggd")
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