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01/03: gnu: Add r-lefser.
From: |
guix-commits |
Subject: |
01/03: gnu: Add r-lefser. |
Date: |
Tue, 2 May 2023 04:15:00 -0400 (EDT) |
rekado pushed a commit to branch master
in repository guix.
commit 62ed97c07d83f58fb051a77b6d3b79b54e579e09
Author: Ricardo Wurmus <rekado@elephly.net>
AuthorDate: Tue May 2 10:13:08 2023 +0200
gnu: Add r-lefser.
* gnu/packages/bioconductor.scm (r-lefser): New variable.
---
gnu/packages/bioconductor.scm | 23 +++++++++++++++++++++++
1 file changed, 23 insertions(+)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 190cadcc97..31bd4e24b0 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -12320,6 +12320,29 @@ background correction, and quality control features
for GoldenGate, Infinium,
and Infinium HD arrays are also included.")
(license license:gpl2)))
+(define-public r-lefser
+ (package
+ (name "r-lefser")
+ (version "1.10.0")
+ (source (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "lefser" version))
+ (sha256
+ (base32
+ "0wi70b4k7s0xj7bh46s0x0fckqc5qspzq8k4k913vg6cnhqgw2dd"))))
+ (properties `((upstream-name . "lefser")))
+ (build-system r-build-system)
+ (propagated-inputs (list r-coin r-ggplot2 r-mass r-summarizedexperiment))
+ (native-inputs (list r-knitr))
+ (home-page "https://github.com/waldronlab/lefser")
+ (synopsis "LEfSE method for microbiome biomarker discovery")
+ (description
+ "Lefser is an implementation in R of the popular \"LDA Effect
+Size\" (LEfSe) method for microbiome biomarker discovery. It uses the
+Kruskal-Wallis test, Wilcoxon-Rank Sum test, and Linear Discriminant Analysis
+to find biomarkers of groups and sub-groups.")
+ (license license:artistic2.0)))
+
(define-public r-lumi
(package
(name "r-lumi")