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02/02: gnu: Add python-plotnine.
From: |
guix-commits |
Subject: |
02/02: gnu: Add python-plotnine. |
Date: |
Thu, 13 Jul 2023 16:33:19 -0400 (EDT) |
rekado pushed a commit to branch master
in repository guix.
commit ea81a0417a9a5e6ebf3bfd363b5b5fe3f8a0a773
Author: Ricardo Wurmus <rekado@elephly.net>
AuthorDate: Thu Jul 13 22:29:06 2023 +0200
gnu: Add python-plotnine.
* gnu/packages/python-science.scm (python-plotnine): New variable.
---
gnu/packages/python-science.scm | 98 +++++++++++++++++++++++++++++++++++++++++
1 file changed, 98 insertions(+)
diff --git a/gnu/packages/python-science.scm b/gnu/packages/python-science.scm
index 938deaec6a..00d6ad7305 100644
--- a/gnu/packages/python-science.scm
+++ b/gnu/packages/python-science.scm
@@ -50,6 +50,7 @@
#:use-module (gnu packages crypto)
#:use-module (gnu packages databases)
#:use-module (gnu packages gcc)
+ #:use-module (gnu packages geo)
#:use-module (gnu packages image)
#:use-module (gnu packages image-processing)
#:use-module (gnu packages machine-learning)
@@ -1470,6 +1471,103 @@ pandas code.")
aggregated sum and more.")
(license license:bsd-3)))
+(define-public python-plotnine
+ (package
+ (name "python-plotnine")
+ ;; XXX Version 0.12.x exists, but we can't build it because we're still at
+ ;; matplotlib 3.5. We'd need at least 3.6.
+ (version "0.10.1")
+ (source (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/has2k1/plotnine")
+ (commit (string-append "v" version))))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32
+ "0lg53wcm00lj8zbb4q9yj4a0n0fqaqq7c7vj18bda0k56gg0fpwl"))))
+ (build-system pyproject-build-system)
+ (arguments
+ (list
+ #:test-flags
+ ;; These all fail because the images are considered to be too different,
+ ;; though they really do look fine.
+ '(list "-k" (string-append
+ "not TestThemes"
+ (string-join
+ (list
+ ;; Image tests
+ "test_adjust_text"
+ "test_annotation_logticks_coord_flip_discrete"
+ "test_annotation_logticks_faceting"
+ "test_arrow"
+ "test_aslabeller_dict_0tag"
+ "test_caption_simple"
+ "test_continuous_x"
+ "test_continuous_x_fullrange"
+ "test_coord_trans_backtransforms"
+ "test_coord_trans_se_false"
+ "test_datetime_scale_limits"
+ "test_dir_v_ncol"
+ "test_discrete_x"
+ "test_discrete_x_fullrange"
+ "test_facet_grid_drop_false"
+ "test_facet_grid_expression"
+ "test_facet_grid_space_ratios"
+ "test_facet_wrap"
+ "test_facet_wrap_expression"
+ "test_facet_wrap_label_both"
+ "test_label_context_wrap2vars"
+ "test_labeller_cols_both_grid"
+ "test_labeller_cols_both_wrap"
+ "test_labeller_towords"
+ "test_missing_data_discrete_scale"
+ "test_ribbon_facetting"
+ "test_stack_non_linear_scale"
+ "test_uneven_num_of_lines"
+
+ ;; Missing optional modules
+ "test_non_linear_smooth"
+ "test_non_linear_smooth_no_ci")
+ " and not " 'prefix)))
+ #:phases
+ '(modify-phases %standard-phases
+ (add-before 'check 'pre-check
+ (lambda* (#:key inputs outputs #:allow-other-keys)
+ ;; The data files are referenced by the tests but they are not
+ ;; installed.
+ (copy-recursively "plotnine/data"
+ (string-append (site-packages inputs outputs)
+ "/plotnine/data"))
+ ;; Matplotlib needs to be able to write its configuration file
+ ;; somewhere.
+ (setenv "MPLCONFIGDIR" "/tmp")
+ (setenv "TZ" "UTC")
+ (setenv "TZDIR"
+ (search-input-directory inputs "share/zoneinfo")))))))
+ (propagated-inputs
+ (list python-adjusttext
+ python-matplotlib
+ python-mizani
+ python-numpy
+ python-patsy
+ python-scipy
+ python-statsmodels))
+ (native-inputs
+ (list python-geopandas
+ python-mock
+ python-pandas
+ python-pytest python-pytest-cov
+ tzdata-for-tests))
+ (home-page "https://github.com/has2k1/plotnine")
+ (synopsis "Grammar of Graphics for Python")
+ (description
+ "Plotnine is a Python implementation of the Grammar of Graphics.
+It is a powerful graphics concept for creating plots and visualizations in a
+structured and declarative manner. It is inspired by the R package ggplot2
+and aims to provide a similar API and functionality in Python.")
+ (license license:expat)))
+
(define-public python-pyvista
(package
(name "python-pyvista")