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20/32: gnu: Add r-nebulosa.
From: |
guix-commits |
Subject: |
20/32: gnu: Add r-nebulosa. |
Date: |
Wed, 19 Jul 2023 09:55:56 -0400 (EDT) |
rekado pushed a commit to branch master
in repository guix.
commit 1f80d41735612f40ae53c6964c0bc707f1200bbb
Author: Ricardo Wurmus <rekado@elephly.net>
AuthorDate: Wed Jul 19 15:09:55 2023 +0200
gnu: Add r-nebulosa.
* gnu/packages/bioconductor.scm (r-nebulosa): New variable.
---
gnu/packages/bioconductor.scm | 31 +++++++++++++++++++++++++++++++
1 file changed, 31 insertions(+)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 17ad509197..bf989a8220 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -5335,6 +5335,37 @@ pre-calculated probe set quality scores that were used
to define the
mapping.")
(license license:artistic2.0)))
+(define-public r-nebulosa
+ (package
+ (name "r-nebulosa")
+ (version "1.10.0")
+ (source (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "Nebulosa" version))
+ (sha256
+ (base32
+ "0lqm9mfmaxdhhs9di2kjg2rixng78lrrikyp7blmpyqk4c41j3nh"))))
+ (properties `((upstream-name . "Nebulosa")))
+ (build-system r-build-system)
+ (propagated-inputs (list r-ggplot2
+ r-ks
+ r-matrix
+ r-patchwork
+ r-seurat
+ r-singlecellexperiment
+ r-summarizedexperiment))
+ (native-inputs (list r-knitr))
+ (home-page "https://github.com/powellgenomicslab/Nebulosa")
+ (synopsis
+ "Single-cell data visualisation using kernel gene-weighted density
estimation")
+ (description
+ "This package provides a enhanced visualization of single-cell data based
+on gene-weighted density estimation. Nebulosa recovers the signal from
+dropped-out features and allows the inspection of the joint expression from
+multiple features (e.g. genes). @code{Seurat} and @code{SingleCellExperiment}
+objects can be used within Nebulosa.")
+ (license license:gpl3)))
+
;; This is a CRAN package, but it depends on Bioconductor packages.
(define-public r-nmf
(package
- 01/32: gnu: Add r-gwasexacthw., (continued)
- 01/32: gnu: Add r-gwasexacthw., guix-commits, 2023/07/19
- 02/32: gnu: Add r-uchardet., guix-commits, 2023/07/19
- 04/32: gnu: Add r-formula-tools., guix-commits, 2023/07/19
- 03/32: gnu: Add r-operator-tools., guix-commits, 2023/07/19
- 05/32: gnu: Add r-logistf., guix-commits, 2023/07/19
- 06/32: gnu: Add r-enhancedvolcano., guix-commits, 2023/07/19
- 08/32: gnu: Add r-genomicdatacommons., guix-commits, 2023/07/19
- 07/32: gnu: Add r-snprelate., guix-commits, 2023/07/19
- 09/32: gnu: Add r-dyndoc., guix-commits, 2023/07/19
- 14/32: gnu: Add r-raggedexperiment., guix-commits, 2023/07/19
- 20/32: gnu: Add r-nebulosa.,
guix-commits <=
- 24/32: gnu: Add r-ucell., guix-commits, 2023/07/19
- 11/32: gnu: Add r-plyranges., guix-commits, 2023/07/19
- 13/32: gnu: Add r-spatialexperiment., guix-commits, 2023/07/19
- 21/32: gnu: Add r-seqarray., guix-commits, 2023/07/19
- 23/32: gnu: Add r-tcgautils., guix-commits, 2023/07/19
- 28/32: import/utils: Add more initial words to beautify-description., guix-commits, 2023/07/19
- 29/32: gnu: Add r-rtcgatoolbox., guix-commits, 2023/07/19
- 10/32: gnu: Add r-tkwidgets., guix-commits, 2023/07/19
- 12/32: gnu: Add r-singscore., guix-commits, 2023/07/19
- 15/32: gnu: Add r-mfuzz., guix-commits, 2023/07/19