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11/32: gnu: Add r-plyranges.
From: |
guix-commits |
Subject: |
11/32: gnu: Add r-plyranges. |
Date: |
Wed, 19 Jul 2023 09:55:41 -0400 (EDT) |
rekado pushed a commit to branch master
in repository guix.
commit f77216721e20f471f7989590422c595f80d70534
Author: Ricardo Wurmus <rekado@elephly.net>
AuthorDate: Wed Jul 19 14:57:07 2023 +0200
gnu: Add r-plyranges.
* gnu/packages/bioconductor.scm (r-plyranges): New variable.
---
gnu/packages/bioconductor.scm | 34 ++++++++++++++++++++++++++++++++++
1 file changed, 34 insertions(+)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 58294f8a3e..69c054e4c7 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -11263,6 +11263,40 @@ PLGEM has been shown to improve the detection of
differentially expressed
genes or proteins in these datasets.")
(license license:gpl2)))
+(define-public r-plyranges
+ (package
+ (name "r-plyranges")
+ (version "1.20.0")
+ (source (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "plyranges" version))
+ (sha256
+ (base32
+ "1qv8snpcxpg16v5ji7sq3bnmgrgghz9h4mh246mcnnxfhi44b6nv"))))
+ (properties `((upstream-name . "plyranges")))
+ (build-system r-build-system)
+ (propagated-inputs (list r-biocgenerics
+ r-dplyr
+ r-genomeinfodb
+ r-genomicalignments
+ r-genomicranges
+ r-iranges
+ r-magrittr
+ r-rlang
+ r-rsamtools
+ r-rtracklayer
+ r-s4vectors
+ r-tidyselect))
+ (native-inputs (list r-knitr))
+ (home-page "https://bioconductor.org/packages/plyranges")
+ (synopsis "Fluent interface for manipulating GenomicRanges")
+ (description
+ "This package provides a dplyr-like interface for interacting with the
+common Bioconductor classes @code{Ranges} and @code{GenomicRanges}. By
+providing a grammatical and consistent way of manipulating these classes their
+accessiblity for new Bioconductor users is hopefully increased.")
+ (license license:artistic2.0)))
+
(define-public r-inspect
(package
(name "r-inspect")
- 04/32: gnu: Add r-formula-tools., (continued)
- 04/32: gnu: Add r-formula-tools., guix-commits, 2023/07/19
- 03/32: gnu: Add r-operator-tools., guix-commits, 2023/07/19
- 05/32: gnu: Add r-logistf., guix-commits, 2023/07/19
- 06/32: gnu: Add r-enhancedvolcano., guix-commits, 2023/07/19
- 08/32: gnu: Add r-genomicdatacommons., guix-commits, 2023/07/19
- 07/32: gnu: Add r-snprelate., guix-commits, 2023/07/19
- 09/32: gnu: Add r-dyndoc., guix-commits, 2023/07/19
- 14/32: gnu: Add r-raggedexperiment., guix-commits, 2023/07/19
- 20/32: gnu: Add r-nebulosa., guix-commits, 2023/07/19
- 24/32: gnu: Add r-ucell., guix-commits, 2023/07/19
- 11/32: gnu: Add r-plyranges.,
guix-commits <=
- 13/32: gnu: Add r-spatialexperiment., guix-commits, 2023/07/19
- 21/32: gnu: Add r-seqarray., guix-commits, 2023/07/19
- 23/32: gnu: Add r-tcgautils., guix-commits, 2023/07/19
- 28/32: import/utils: Add more initial words to beautify-description., guix-commits, 2023/07/19
- 29/32: gnu: Add r-rtcgatoolbox., guix-commits, 2023/07/19
- 10/32: gnu: Add r-tkwidgets., guix-commits, 2023/07/19
- 12/32: gnu: Add r-singscore., guix-commits, 2023/07/19
- 15/32: gnu: Add r-mfuzz., guix-commits, 2023/07/19
- 16/32: gnu: r-cellid: Move out of experiments section., guix-commits, 2023/07/19
- 18/32: gnu: Add r-survcomp., guix-commits, 2023/07/19