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22/32: gnu: Add r-globalancova.
From: |
guix-commits |
Subject: |
22/32: gnu: Add r-globalancova. |
Date: |
Wed, 19 Jul 2023 09:55:56 -0400 (EDT) |
rekado pushed a commit to branch master
in repository guix.
commit 3132fcf7f8e9dda748e3e395c83adfc1de70e52e
Author: Ricardo Wurmus <rekado@elephly.net>
AuthorDate: Wed Jul 19 15:13:42 2023 +0200
gnu: Add r-globalancova.
* gnu/packages/bioconductor.scm (r-globalancova): New variable.
---
gnu/packages/bioconductor.scm | 32 ++++++++++++++++++++++++++++++++
1 file changed, 32 insertions(+)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 1cef5bb0d5..e46a9175fa 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -7157,6 +7157,38 @@ profiles and assignment of a status (gain, normal or
loss) to each chromosomal
regions identified.")
(license license:gpl2)))
+(define-public r-globalancova
+ (package
+ (name "r-globalancova")
+ (version "4.18.0")
+ (source (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "GlobalAncova" version))
+ (sha256
+ (base32
+ "1fld18rmi6rqm2nr549a4740w1iq3mf5df67v9ba6h42r4abs1ar"))))
+ (properties `((upstream-name . "GlobalAncova")))
+ (build-system r-build-system)
+ (propagated-inputs (list r-annotate
+ r-annotationdbi
+ r-biobase
+ r-corpcor
+ r-dendextend
+ r-globaltest
+ r-gseabase
+ r-vgam))
+ (home-page "https://bioconductor.org/packages/GlobalAncova")
+ (synopsis "Global test for groups of variables via model comparisons")
+ (description
+ "This package supports the computation of an F-test for the association
+between expression values and clinical entities. In many cases a two way
+layout with gene and a dichotomous group as factors will be considered.
+However, adjustment for other covariates and the analysis of arbitrary
+clinical variables, interactions, gene co-expression, time series data and so
+on is also possible. The test is carried out by comparison of corresponding
+linear models via the extra sum of squares principle.")
+ (license license:gpl2+)))
+
(define-public r-globaltest
(package
(name "r-globaltest")
- 23/32: gnu: Add r-tcgautils., (continued)
- 23/32: gnu: Add r-tcgautils., guix-commits, 2023/07/19
- 28/32: import/utils: Add more initial words to beautify-description., guix-commits, 2023/07/19
- 29/32: gnu: Add r-rtcgatoolbox., guix-commits, 2023/07/19
- 10/32: gnu: Add r-tkwidgets., guix-commits, 2023/07/19
- 12/32: gnu: Add r-singscore., guix-commits, 2023/07/19
- 15/32: gnu: Add r-mfuzz., guix-commits, 2023/07/19
- 16/32: gnu: r-cellid: Move out of experiments section., guix-commits, 2023/07/19
- 18/32: gnu: Add r-survcomp., guix-commits, 2023/07/19
- 17/32: gnu: r-missmethyl: Move out of experiments section., guix-commits, 2023/07/19
- 19/32: gnu: Add r-ggtreeextra., guix-commits, 2023/07/19
- 22/32: gnu: Add r-globalancova.,
guix-commits <=
- 25/32: gnu: Add r-beaddatapackr., guix-commits, 2023/07/19
- 30/32: gnu: Add r-spectra., guix-commits, 2023/07/19
- 32/32: import/utils: beautify-description: Wrap class names in @code{...}., guix-commits, 2023/07/19
- 27/32: gnu: Add r-gwastools., guix-commits, 2023/07/19
- 31/32: gnu: Add r-qfeatures., guix-commits, 2023/07/19
- 26/32: gnu: Add r-beadarray., guix-commits, 2023/07/19