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02/02: gnu: Add python-peaks2utr.
From: |
guix-commits |
Subject: |
02/02: gnu: Add python-peaks2utr. |
Date: |
Tue, 12 Sep 2023 06:34:32 -0400 (EDT) |
rekado pushed a commit to branch master
in repository guix.
commit 9996896dc252a02ba3b17473a685ce8957237546
Author: Ricardo Wurmus <rekado@elephly.net>
AuthorDate: Tue Sep 12 12:28:08 2023 +0200
gnu: Add python-peaks2utr.
* gnu/packages/bioinformatics.scm (python-peaks2utr): New variable.
---
gnu/packages/bioinformatics.scm | 36 ++++++++++++++++++++++++++++++++++++
1 file changed, 36 insertions(+)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 0df5bbfad5..e24d70e569 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -1945,6 +1945,42 @@ matplotlib Axes objects, making them easy to style and
incorporate into
multi-panel figures.")
(license license:expat)))
+(define-public python-peaks2utr
+ (package
+ (name "python-peaks2utr")
+ (version "1.2.0")
+ (source (origin
+ (method url-fetch)
+ (uri (pypi-uri "peaks2utr" version))
+ (sha256
+ (base32
+ "1idp9cgwqxvryf4qqrc1xjsamfqn3jmr56kmjp2h1ysmckwmhw4v"))))
+ (build-system pyproject-build-system)
+ (arguments
+ (list
+ #:test-flags
+ ;; These two tests fail because file names are not URLs.
+ '(list "-k" "not test_annotation.py")))
+ (propagated-inputs
+ (list python-asgiref
+ python-gffutils
+ python-importlib-resources
+ macs
+ python-numpy
+ python-psutil
+ python-pybedtools
+ python-pysam
+ python-requests
+ python-tqdm
+ python-typing-extensions
+ python-zipp))
+ (home-page "https://github.com/haessar/peaks2utr")
+ (synopsis "Python CLI for annotating three prime UTR")
+ (description
+ "This package provides a robust, parallelized Python CLI for annotating
+three prime UTR.")
+ (license license:gpl3+)))
+
(define-public python-pegasusio
(package
(name "python-pegasusio")