[Date Prev][Date Next][Thread Prev][Thread Next][Date Index][Thread Index]
branch master updated: gnu: Add r-interactivedisplay.
From: |
guix-commits |
Subject: |
branch master updated: gnu: Add r-interactivedisplay. |
Date: |
Wed, 13 Sep 2023 06:25:46 -0400 |
This is an automated email from the git hooks/post-receive script.
rekado pushed a commit to branch master
in repository guix.
The following commit(s) were added to refs/heads/master by this push:
new cda20190bc gnu: Add r-interactivedisplay.
cda20190bc is described below
commit cda20190bccf9bd55c264b1084eab8b6499c15cc
Author: Navid Afkhami <navid.afkhami@mdc-berlin.de>
AuthorDate: Sat Sep 2 21:56:44 2023 +0000
gnu: Add r-interactivedisplay.
* gnu/packages/bioconductor.scm (r-interactivedisplay): New variable.
Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
---
gnu/packages/bioconductor.scm | 85 +++++++++++++++++++++++++++++++++++++++++++
1 file changed, 85 insertions(+)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index c913232680..e5e9c80291 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -51,6 +51,7 @@
#:use-module (gnu packages haskell-xyz)
#:use-module (gnu packages image)
#:use-module (gnu packages java)
+ #:use-module (gnu packages javascript)
#:use-module (gnu packages maths)
#:use-module (gnu packages netpbm)
#:use-module (gnu packages python)
@@ -7734,6 +7735,90 @@ of other R packages who wish to make use of HTSlib.")
microarray data, using nearest neighbor averaging.")
(license license:gpl2+)))
+(define-public r-interactivedisplay
+ (package
+ (name "r-interactivedisplay")
+ (version "1.38.0")
+ (source (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "interactiveDisplay" version))
+ (sha256
+ (base32
+ "1y9fdnpz1bagrwhyj8jikp2q5fd9y74j48l5z7f0s88v88sa7szl"))
+ (snippet
+ '(for-each delete-file
+ '("inst/www/js/jquery.js"
+ "inst/www/js/jquery.min.js"
+ "inst/www/js/jquery.dataTables.min.js")))))
+ (properties `((upstream-name . "interactiveDisplay")))
+ (build-system r-build-system)
+ (arguments
+ (list
+ #:modules '((guix build utils)
+ (guix build r-build-system)
+ (srfi srfi-1))
+ #:phases
+ '(modify-phases %standard-phases
+ (add-after 'unpack 'process-javascript
+ (lambda* (#:key inputs #:allow-other-keys)
+ (call-with-values
+ (lambda ()
+ (unzip2
+ `((,(assoc-ref inputs "js-jquery-1.8.2")
+ "inst/www/js/jquery.js")
+ (,(assoc-ref inputs "js-jquery-1.9.1")
+ "inst/www/js/jquery.min.js")
+ (,(search-input-file inputs
+
"/share/javascript/jquery.dataTables.min.js")
+ "inst/www/js/jquery.dataTables.min.js"))))
+ (lambda (sources targets)
+ (for-each (lambda (source target)
+ (format #true "Processing ~a --> ~a~%"
+ source target)
+ (invoke "esbuild" source "--minify"
+ (string-append "--outfile=" target)))
+ sources targets))))))))
+ (propagated-inputs
+ (list r-annotationdbi
+ r-biocgenerics
+ r-biocmanager
+ r-category
+ r-dt
+ r-ggplot2
+ r-gridsvg
+ r-interactivedisplaybase
+ r-plyr
+ r-rcolorbrewer
+ r-reshape2
+ r-shiny
+ r-zlibbioc
+ r-xml))
+ (native-inputs
+ `(("esbuild" ,esbuild)
+ ("r-knitr" ,r-knitr)
+ ("js-datatables" ,js-datatables)
+ ("js-jquery-1.8.2"
+ ,(origin
+ (method url-fetch)
+ (uri "https://code.jquery.com/jquery-1.8.2.js")
+ (sha256
+ (base32
+ "0nikk2clbnyi02k0brvhbd8m43lfh4l1zrya35jya9sy6wb9b9ng"))))
+ ("js-jquery-1.9.1"
+ ,(origin
+ (method url-fetch)
+ (uri "https://code.jquery.com/jquery-1.9.1.js")
+ (sha256
+ (base32
+ "0h4dk67yc9d0kadqxb6b33585f3x3559p6qmp70l00qwq030vn3v"))))))
+ (home-page "https://bioconductor.org/packages/interactiveDisplay")
+ (synopsis "Package for Shiny web displays of Bioconductor objects")
+ (description
+ "This package offers interactive Shiny displays for Bioconductor
+objects. In addition, this package empowers users to develop engaging
+visualizations and interfaces for working with Bioconductor data.")
+ (license license:artistic2.0)))
+
(define-public r-interactivedisplaybase
(package
(name "r-interactivedisplaybase")
[Prev in Thread] |
Current Thread |
[Next in Thread] |
- branch master updated: gnu: Add r-interactivedisplay.,
guix-commits <=