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01/01: Merge branch 'master' into gnome-team.


From: guix-commits
Subject: 01/01: Merge branch 'master' into gnome-team.
Date: Fri, 15 Sep 2023 12:47:55 -0400 (EDT)

lilyp pushed a commit to branch gnome-team
in repository guix.

commit e9ff5d51e3297089e66c124195e1f1b42dbded65
Merge: 43cdc8a075 b696fb41bc
Author: Liliana Marie Prikler <liliana.prikler@gmail.com>
AuthorDate: Fri Sep 15 18:20:38 2023 +0200

    Merge branch 'master' into gnome-team.

 doc/guix.texi                                      |  94 ++-
 etc/time-travel-manifest.scm                       |  21 +-
 gnu/home/services/desktop.scm                      |   2 +-
 gnu/local.mk                                       |  18 +-
 gnu/packages/admin.scm                             |  75 ++-
 gnu/packages/algebra.scm                           |  32 --
 gnu/packages/base.scm                              |   3 +-
 gnu/packages/bioconductor.scm                      | 135 ++++-
 gnu/packages/bioinformatics.scm                    | 204 ++++---
 gnu/packages/boost.scm                             |   4 +-
 gnu/packages/c.scm                                 |  29 +
 gnu/packages/chez.scm                              |  10 +-
 gnu/packages/ci.scm                                |   6 +-
 gnu/packages/cluster.scm                           |   4 +-
 gnu/packages/code.scm                              |  45 +-
 gnu/packages/cran.scm                              | 424 +++++++-------
 gnu/packages/crates-io.scm                         | 132 ++++-
 gnu/packages/databases.scm                         |  19 +-
 gnu/packages/datastructures.scm                    |   4 +-
 gnu/packages/debian.scm                            |  15 +-
 gnu/packages/debug.scm                             |   6 +-
 gnu/packages/dezyne.scm                            |   4 +-
 gnu/packages/diffoscope.scm                        |   6 +-
 gnu/packages/django.scm                            |   5 +-
 gnu/packages/emacs-xyz.scm                         | 245 ++++++--
 gnu/packages/fonts.scm                             |   4 +-
 gnu/packages/games.scm                             | 122 ++--
 gnu/packages/geo.scm                               |   1 +
 gnu/packages/glib.scm                              |   6 +-
 gnu/packages/gnome-xyz.scm                         |  12 +-
 gnu/packages/gnome.scm                             |  25 +
 gnu/packages/golang.scm                            |   4 +-
 gnu/packages/graphics.scm                          |  82 ++-
 gnu/packages/guile-xyz.scm                         |  74 ++-
 gnu/packages/heads.scm                             |   1 +
 gnu/packages/image.scm                             |  89 ++-
 gnu/packages/ipfs.scm                              |   7 +-
 gnu/packages/julia-jll.scm                         |   7 +-
 gnu/packages/julia-xyz.scm                         |   3 +-
 gnu/packages/kde-plasma.scm                        |   1 +
 gnu/packages/libftdi.scm                           |  77 ++-
 gnu/packages/linux.scm                             |  34 +-
 gnu/packages/lisp-xyz.scm                          |  11 +-
 gnu/packages/lua.scm                               | 151 +++--
 gnu/packages/machine-learning.scm                  | 281 +++++----
 gnu/packages/maths.scm                             |  68 ++-
 gnu/packages/mpi.scm                               |   6 +
 gnu/packages/music.scm                             |   4 +-
 gnu/packages/networking.scm                        |  64 +--
 gnu/packages/openstack.scm                         |  15 +-
 gnu/packages/package-management.scm                |  59 +-
 gnu/packages/parallel.scm                          |   4 +-
 gnu/packages/patches/asli-use-system-libs.patch    |  72 +++
 gnu/packages/patches/ganeti-lens-compat.patch      |  40 ++
 gnu/packages/patches/ganeti-procps-compat.patch    |  45 ++
 .../patches/ganeti-relax-dependencies.patch        |  28 +
 .../ganeti-reorder-arbitrary-definitions.patch     |  90 +++
 .../patches/ganeti-template-haskell-2.17.patch     |  69 +++
 .../patches/ganeti-template-haskell-2.18.patch     | 179 ++++++
 gnu/packages/patches/glibc-hurd-getauxval.patch    |  34 ++
 gnu/packages/patches/hdf4-architectures.patch      | 632 ---------------------
 gnu/packages/patches/hdf4-tirpc.patch              |  33 --
 gnu/packages/patches/iputils-libcap-compat.patch   |  37 --
 ...ap-executable-name-for-dot-desktop-search.patch |  89 +++
 .../libftdi-fix-paths-when-FTDIPP-set.patch        |  39 ++
 gnu/packages/patches/nanosvg-prusa-slicer.patch    | 248 ++++++++
 .../patches/python-pyflakes-test-location.patch    |  42 --
 .../patches/racket-backport-8.10-rktboot.patch     | 130 +++++
 .../patches/racket-rktboot-riscv64-support.patch   |  15 -
 .../patches/tor-remove-defensive-assert.patch      |  28 +
 gnu/packages/pdf.scm                               |  10 +-
 gnu/packages/perl.scm                              |   1 -
 gnu/packages/piet.scm                              |  21 +-
 gnu/packages/pulseaudio.scm                        |   6 +-
 gnu/packages/python-check.scm                      |  23 +-
 gnu/packages/python-web.scm                        |   6 +-
 gnu/packages/python-xyz.scm                        | 148 +++--
 gnu/packages/racket.scm                            |  44 +-
 gnu/packages/rust-apps.scm                         |  34 +-
 gnu/packages/rust.scm                              |   6 +-
 gnu/packages/scheme.scm                            |  45 +-
 gnu/packages/serialization.scm                     |  11 +
 gnu/packages/skarnet.scm                           |   1 +
 gnu/packages/sqlite.scm                            |   4 +-
 gnu/packages/statistics.scm                        |  59 +-
 gnu/packages/syncthing.scm                         |   8 +-
 gnu/packages/terminals.scm                         |  29 +-
 gnu/packages/tor.scm                               |   8 +-
 gnu/packages/upnp.scm                              |   4 +-
 gnu/packages/video.scm                             |   4 +-
 gnu/packages/vim.scm                               |  56 +-
 gnu/packages/virtualization.scm                    |  25 +-
 gnu/packages/web-browsers.scm                      |   4 +-
 gnu/packages/web.scm                               |   4 +-
 gnu/packages/wm.scm                                |   4 +-
 gnu/packages/xfce.scm                              |   4 +-
 gnu/services/cgit.scm                              |   2 +-
 gnu/services/guix.scm                              | 127 ++++-
 gnu/services/networking.scm                        |   1 +
 gnu/services/vpn.scm                               |   2 +-
 gnu/system/examples/vm-image.tmpl                  |   6 +-
 gnu/tests/ganeti.scm                               |   9 +-
 gnu/tests/guix.scm                                 |  81 ++-
 guix/gnu-maintenance.scm                           |  29 +-
 guix/lint.scm                                      |  56 +-
 guix/scripts/shell.scm                             |   4 +-
 guix/search-paths.scm                              |  11 +-
 guix/upstream.scm                                  |   5 +-
 nix/libstore/sqlite.hh                             |   1 +
 tests/lint.scm                                     |  32 +-
 110 files changed, 3634 insertions(+), 1905 deletions(-)

diff --cc gnu/packages/glib.scm
index 4a5f8ebfb2,b5eb4602da..8af89d60e0
--- a/gnu/packages/glib.scm
+++ b/gnu/packages/glib.scm
@@@ -338,7 -325,7 +338,7 @@@ information, refer to the @samp{dbus-da
                           (substitute* '("appmonitor.c"
                                          "async-splice-output-stream.c"
                                          "autoptr.c"
--                                        "contexts.c"       
++                                        "contexts.c"
                                          "converter-stream.c"
                                          "file.c"
                                          "g-file-info.c"
@@@ -347,13 -334,13 +347,13 @@@
                                          "gapplication.c"
                                          "gdbus-connection-flush.c"
                                          "gdbus-connection.c"
--                                        "gdbus-names.c"    
++                                        "gdbus-names.c"
                                          "gdbus-server-auth.c"
                                          "gsocketclient-slow.c"
                                          "gsubprocess.c"
                                          "io-stream.c"
                                          "live-g-file.c"
--                                        "memory-monitor.c" 
++                                        "memory-monitor.c"
                                          "mimeapps.c"
                                          "network-monitor-race.c"
                                          "network-monitor.c"



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