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branch r-updates created (now 3c4bfd969d)

From: guix-commits
Subject: branch r-updates created (now 3c4bfd969d)
Date: Fri, 3 Nov 2023 12:36:10 -0400 (EDT)

rekado pushed a change to branch r-updates
in repository guix.

      at 3c4bfd969d gnu: r-phyloseq: Update to 1.46.0.

This branch includes the following new commits:

     new 5f1baf7d6a guix: Upgrade to Bioconductor 3.18.
     new e325ab9ef3 gnu: Add r-metabocoreutils.
     new 47d5069a5e gnu: Add r-sparsearray.
     new 45946336ab gnu: Add r-msexperiment.
     new d0e6f0c067 gnu: Add r-collapse.
     new 5510f158ca gnu: Add r-fancova.
     new e0815882b3 gnu: Add r-mpo-db.
     new 2b3a2d5bcb gnu: Add r-hpo-db.
     new b63d9d2cf8 gnu: r-debcam: Update to 1.20.0.
     new efbf18c3d7 gnu: r-abarray: Update to 1.70.0.
     new a6d90affaa gnu: r-absseq: Update to 1.56.0.
     new af2d9214ea gnu: r-adacgh2: Update to 2.42.0.
     new 72d5027bd1 gnu: r-adam: Update to 1.18.0.
     new 59089b3122 gnu: r-adamgui: Update to 1.18.0.
     new 69f7a7fdd8 gnu: r-adimpute: Update to 1.12.0.
     new 4dd47dc1eb gnu: r-adsplit: Update to 1.72.0.
     new f1a02b7242 gnu: r-affixcan: Update to 1.20.0.
     new 9fcdc22472 gnu: r-affyilm: Update to 1.54.0.
     new 29765bfc86 gnu: r-affylmgui: Update to 1.76.0.
     new 1126cc8946 gnu: r-affyplm: Update to 1.78.0.
     new 1e6d6adf04 gnu: r-affyrnadegradation: Update to 1.48.0.
     new 5766bffc6d gnu: r-agdex: Update to 1.50.0.
     new 81ddc027cb gnu: r-aggregatebiovar: Update to 1.12.0.
     new 61675def81 gnu: r-agilp: Update to 3.34.0.
     new 99c4f5b7e5 gnu: r-adductomicsr: Update to 1.18.0.
     new c06026e8c9 gnu: r-aims: Update to 1.34.0.
     new dddde84afd gnu: r-airpart: Update to 1.10.0.
     new 4ae2a16714 gnu: r-amountain: Update to 1.28.0.
     new b77292a8fc gnu: r-amplican: Update to 1.24.0.
     new e1e6de168e gnu: r-amaretto: Update to 1.18.0.
     new 336b3424e9 gnu: r-anaquin: Update to 2.26.0.
     new 4551a5ecc1 gnu: r-ancombc: Update to 2.4.0.
     new f1aad5ad57 gnu: r-annotationhubdata: Update to 1.32.0.
     new 235f2c63b9 gnu: r-anvil: Update to 1.14.0.
     new a9a0c34718 gnu: r-aldex2: Update to 1.34.0.
     new 1d3afa627a gnu: r-alevinqc: Update to 1.18.0.
     new 1da144a539 gnu: r-alphabeta: Update to 1.16.0.
     new 2658a83c97 gnu: r-alpsnmr: Update to 4.4.0.
     new 8e5f9bf2bc gnu: r-altcdfenvs: Update to 2.64.0.
     new 3f014ae78a gnu: r-aneufinder: Update to 1.30.0.
     new 43beb38e68 gnu: r-annmap: Update to 1.44.0.
     new dbf37df016 gnu: r-antiprofiles: Update to 1.42.0.
     new 4911ee9c1e gnu: r-arrayexpress: Update to 1.62.0.
     new d4b17c887f gnu: r-arrayqualitymetrics: Update to 3.58.0.
     new edfb1a4d8d gnu: r-arraymvout: Update to 1.60.0.
     new 78a058627a gnu: r-arrayquality: Update to 1.80.0.
     new 4993c4982a gnu: r-asafe: Update to 1.28.0.
     new 5ea0112776 gnu: r-aseb: Update to 1.46.0.
     new 1d5c072c50 gnu: r-asgsca: Update to 1.36.0.
     new 05fe6a1e92 gnu: r-asics: Update to 2.18.0.
     new 2bbf71c11a gnu: r-aspli: Update to 2.12.0.
     new 4f47451cd6 gnu: r-assessorf: Update to 1.20.0.
     new f57af51b53 gnu: r-asset: Update to 2.20.0.
     new 2087d3571f gnu: r-atena: Update to 1.8.0.
     new 1f9acb8561 gnu: r-atsnp: Update to 1.18.0.
     new 8f6f023fa0 gnu: r-attract: Update to 1.54.0.
     new d1cf8be895 gnu: r-awfisher: Update to 1.16.0.
     new fed2113db9 gnu: r-awst: Update to 1.10.0.
     new 5a1c35989c gnu: r-baalchip: Update to 1.28.0.
     new 1b4ef919b5 gnu: r-basespacer: Update to 1.46.0.
     new 1d73272075 gnu: r-bader: Update to 1.40.0.
     new 47566a114d gnu: r-badregionfinder: Update to 1.30.0.
     new d6fee5c1f1 gnu: r-bambu: Update to 3.4.0.
     new 600acde407 gnu: r-bandits: Update to 1.18.0.
     new 7ad8b296de gnu: r-banocc: Update to 1.26.0.
     new 1fda7d2002 gnu: r-barcodetrackr: Update to 1.10.0.
     new 484c6cb27b gnu: r-biocversion: Update to 3.18.0.
     new b22afc7853 gnu: r-biocgenerics: Update to 0.48.1.
     new ffeaa7a9a1 gnu: r-breakpointr: Update to 1.20.0.
     new 05ed185c95 gnu: r-cardelino: Update to 1.4.0.
     new 144e820b70 gnu: r-cellid: Update to 1.10.0.
     new e84d4125ca gnu: r-coregx: Update to 2.6.0.
     new 4bcc740b16 gnu: r-coverageview: Update to 1.40.0.
     new ea52a77aab gnu: r-cummerbund: Update to 2.44.0.
     new 1412826c81 gnu: r-dama: Update to 1.74.0.
     new d95bc358bd gnu: r-damefinder: Update to 1.14.0.
     new 8a65b4a6de gnu: r-dearseq: Update to 1.14.0.
     new 9b11eee6fc gnu: r-decipher: Update to 2.30.0.
     new feacefba66 gnu: r-decomptumor2sig: Update to 2.18.0.
     new d615ac368d gnu: r-deconrnaseq: Update to 1.44.0.
     new 27fe08f648 gnu: r-decontam: Update to 1.22.0.
     new 4d90d37d7b gnu: r-deconvr: Update to 1.8.0.
     new 7949c0a9b6 gnu: r-decoupler: Update to 2.8.0.
     new a187a5d785 gnu: r-deepsnv: Update to 1.48.0.
     new 199a05764a gnu: r-degreport: Update to 1.38.0.
     new 32f641b2b3 gnu: r-delayedarray: Update to 0.28.0.
     new d51c8b9d26 gnu: r-densvis: Update to 1.12.0.
     new cda6adc6f4 gnu: r-derfinder: Update to 1.36.0.
     new a0e4aa2566 gnu: r-derfinderhelper: Update to 1.36.0.
     new 08cf7a3270 gnu: r-drimseq: Update to 1.30.0.
     new b8d3e4a8ae gnu: r-dropletutils: Update to 1.22.0.
     new 38df4c4581 gnu: r-dyndoc: Update to 1.80.0.
     new ea9d84cae0 gnu: r-bluster: Update to 1.12.0.
     new d6e1300173 gnu: r-ideoviz: Update to 1.37.0.
     new ae93c36fab gnu: r-infercnv: Update to 1.18.0.
     new 338aa9ac01 gnu: r-iranges: Update to 2.36.0.
     new 813131fea8 gnu: r-isoformswitchanalyzer: Update to 2.2.0.
     new c0a550a8b5 gnu: r-italics: Update to 2.62.0.
     new 0141f77000 gnu: r-nebulosa: Update to 1.12.0.
     new 927ed50b03 gnu: r-affy: Update to 1.80.0.
     new 5ab90f34e5 gnu: r-affycomp: Update to 1.78.0.
     new 0c68da9bd9 gnu: r-affycontam: Update to 1.60.0.
     new d43d065614 gnu: r-affyio: Update to 1.72.0.
     new 684b36586f gnu: r-affxparser: Update to 1.74.0.
     new 18da93bad4 gnu: r-annotate: Update to 1.80.0.
     new 2a2c6264d3 gnu: r-annotationdbi: Update to 1.64.0.
     new 4ca1637daa gnu: r-annotationfilter: Update to 1.26.0.
     new a4476029b3 gnu: r-annotationforge: Update to 1.44.0.
     new 8984da6835 gnu: r-annotationhub: Update to 3.10.0.
     new 89c5e1e580 gnu: r-aroma-light: Update to 3.32.0.
     new b3e5ddbe12 gnu: r-bamsignals: Update to 1.34.0.
     new 04e74c36cf gnu: r-biobase: Update to 2.62.0.
     new 23f3632143 gnu: r-biomart: Update to 2.58.0.
     new 529c25ec40 gnu: r-biocparallel: Update to 1.36.0.
     new c60720a3d4 gnu: r-biostrings: Update to 2.70.1.
     new 2b82f06c14 gnu: r-biovizbase: Update to 1.50.0.
     new 555a4ee5d6 gnu: r-bsgenome: Update to 1.70.1.
     new 190949a602 gnu: r-category: Update to 2.68.0.
     new 17e7391170 gnu: r-chipseeker: Update to 1.38.0.
     new 6c19d01990 gnu: r-chipseq: Update to 1.52.0.
     new ca81394666 gnu: r-complexheatmap: Update to 2.18.0.
     new 65b3c21c39 gnu: r-deseq2: Update to 1.42.0.
     new d70b44f8bb gnu: r-dexseq: Update to 1.48.0.
     new 92d8551e2a gnu: r-diffcyt: Update to 1.22.0.
     new 03c4fccfc0 gnu: r-dirichletmultinomial: Update to 1.44.0.
     new c74061f99f gnu: r-dittoseq: Update to 1.14.0.
     new c1187625d9 gnu: r-edaseq: Update to 2.36.0.
     new 7aad8daa61 gnu: r-edger: Update to 4.0.1.
     new b387f88f40 gnu: r-enhancedvolcano: Update to 1.20.0.
     new 4f07b58378 gnu: r-enmix: Update to 1.38.01.
     new 4999f93e92 gnu: r-ensembldb: Update to 2.26.0.
     new f3405a3067 gnu: r-fastseg: Update to 1.48.0.
     new 576139e2a3 gnu: r-gage: Update to 2.52.0.
     new ca31a1d71a gnu: r-genefilter: Update to 1.84.0.
     new bea4e44758 gnu: r-geneoverlap: Update to 1.38.0.
     new f67e9e2acc gnu: r-genomation: Update to 1.34.0.
     new 98357a92a5 gnu: r-genomeinfodb: Update to 1.38.0.
     new 9676f0a072 gnu: r-genomicalignments: Update to 1.38.0.
     new e8554f894a gnu: r-genomicdatacommons: Update to 1.26.0.
     new 3d729fac9f gnu: r-genomicfeatures: Update to 1.54.1.
     new b3cecce8e2 gnu: r-genomicfiles: Update to 1.38.0.
     new 9b2863f968 gnu: r-genomicranges: Update to 1.54.1.
     new 18b3a0e0c7 gnu: r-glad: Update to 2.66.0.
     new fe5d191060 gnu: r-globalancova: Update to 4.20.0.
     new 78788df232 gnu: r-globaltest: Update to 5.56.0.
     new f476ee7e6d gnu: r-gostats: Update to 2.68.0.
     new 728654118f gnu: r-gseabase: Update to 1.64.0.
     new a3b194dabf gnu: r-gsva: Update to 1.50.0.
     new f477c7ffec gnu: r-harshlight: Update to 1.74.0.
     new 42b1ab4c7d gnu: r-hpar: Update to 1.44.0.
     new afab7b2ffc gnu: r-r3cseq: Update to 1.48.0.
     new 2b759c7d3f gnu: r-r4rna: Update to 1.30.0.
     new bf718dbb18 gnu: r-radiogx: Update to 2.6.0.
     new c40c591cfd gnu: r-raggedexperiment: Update to 1.26.0.
     new ceef6028cd gnu: r-rdisop: Update to 1.62.0.
     new c52e2d5a0e gnu: r-rhtslib: Update to 2.4.0.
     new 69e68d6bc5 gnu: r-impute: Update to 1.76.0.
     new ca203e8d87 gnu: r-interactivedisplay: Update to 1.40.0.
     new fe8380c0ba gnu: r-interactivedisplaybase: Update to 1.40.0.
     new de716063d9 gnu: r-keggrest: Update to 1.42.0.
     new 4b77eda7fc gnu: r-lea: Update to 3.14.0.
     new 9d8edc2ecd gnu: r-lfa: Update to 2.2.0.
     new d18720418f gnu: r-limma: Update to 3.58.1.
     new 361b257c23 gnu: r-maaslin2: Update to 1.16.0.
     new 673d10a644 gnu: r-made4: Update to 1.76.0.
     new 1c9f3d29f0 gnu: r-makecdfenv: Update to 1.78.0.
     new f5746afbeb gnu: r-manor: Update to 1.74.0.
     new 813397b7e4 gnu: r-maser: Update to 1.20.0.
     new aa69ca221d gnu: r-mdqc: Update to 1.64.0.
     new 4ccce65924 gnu: r-metagenomeseq: Update to 1.43.0.
     new 5a3f5584d4 gnu: r-metaneighbor: Update to 1.22.0.
     new 2fe3310cf1 gnu: r-methylkit: Update to 1.28.0.
     new d265ebfff3 gnu: r-mfuzz: Update to 2.62.0.
     new 8d1b411f00 gnu: r-mmuphin: Update to 1.16.0.
     new ff57bd89c1 gnu: r-muscat: Update to 1.16.0.
     new 7182a524c9 gnu: r-mutationalpatterns: Update to 3.12.0.
     new 070ccf0107 gnu: r-msa: Update to 1.34.0.
     new 68ebda870a gnu: r-msnbase: Update to 2.28.0.
     new 7a2ed06e4f gnu: r-msnid: Update to 1.36.0.
     new eb67ef1545 gnu: r-mzid: Update to 1.40.0.
     new a683cdebf7 gnu: r-mzr: Update to 2.36.0.
     new f029c00509 gnu: r-organism-dplyr: Update to 1.30.1.
     new eeadb1134b gnu: r-organismdbi: Update to 1.44.0.
     new 20efccb4a0 gnu: r-oscope: Update to 1.32.0.
     new 344c4b21a3 gnu: r-pcaexplorer: Update to 2.28.0.
     new 377a0204de gnu: r-pcamethods: Update to 1.94.0.
     new 777d5e1d77 gnu: r-pfamanalyzer: Update to 1.2.0.
     new 6a5d65f41f gnu: r-piano: Update to 2.18.0.
     new 3abf07749c gnu: r-protgenerics: Update to 1.34.0.
     new 807f1d6e6c gnu: r-rbgl: Update to 1.78.0.
     new 30d7a635e4 gnu: r-rcas: Update to 1.28.2.
     new 326e93bfbf gnu: r-regioner: Update to 1.34.0.
     new 0301764905 gnu: r-rhdf5: Update to 2.46.0.
     new 1a82f669f5 gnu: r-rhdf5filters: Update to 1.14.0.
     new d660bdbdaf gnu: r-rsamtools: Update to 2.18.0.
     new 66338c65d3 gnu: r-rtcga: Update to 1.32.0.
     new 5b78ce3f2f gnu: r-rtcgatoolbox: Update to 2.32.1.
     new fdd3851f4a gnu: r-rtracklayer: Update to 1.62.0.
     new 069067c4ce gnu: r-saturn: Update to 1.10.0.
     new cab2e46ae3 gnu: r-scannotatr: Update to 1.8.0.
     new a2faffd5ba gnu: r-scdblfinder: Update to 1.16.0.
     new 862528f5cb gnu: r-scmap: Update to 1.24.0.
     new c659bf578e gnu: r-scry: Update to 1.14.0.
     new 9f782701e1 gnu: r-seqarray: Update to 1.42.0.
     new f71b723187 gnu: r-seqlogo: Update to 1.68.0.
     new c4dc5e15e9 gnu: r-seqpattern: Update to 1.34.0.
     new 55ff6658f4 gnu: r-sesame: Update to 1.20.0.
     new 6eb1313b7f gnu: r-shinymethyl: Update to 1.38.0.
     new 307c1720b4 gnu: r-shortread: Update to 1.60.0.
     new bd20652a79 gnu: r-simplifyenrichment: Update to 1.12.0.
     new 825809fe58 gnu: r-singscore: Update to 1.22.0.
     new 9b4cbb2d85 gnu: r-tcgautils: Update to 1.22.0.
     new bf57d66b3a gnu: r-tkwidgets: Update to 1.80.0.
     new 5483370b17 gnu: r-trackviewer: Update to 1.38.0.
     new 3f5dd5a8eb gnu: r-transcriptr: Update to 1.30.0.
     new a5cd3c1e55 gnu: r-trajectoryutils: Update to 1.10.0.
     new 4d1b4fb067 gnu: r-scds: Update to 1.18.0.
     new 231a3aa70a gnu: r-slingshot: Update to 2.10.0.
     new a6f0400873 gnu: r-spectra: Update to 1.12.0.
     new 68e3f9a199 gnu: r-stager: Update to 1.24.0.
     new 0970c4eda1 gnu: r-stringdb: Update to 2.14.0.
     new cf8b1e5d34 gnu: r-structuralvariantannotation: Update to 1.18.0.
     new b6689640bd gnu: r-summarizedexperiment: Update to 1.32.0.
     new 5096137380 gnu: r-survcomp: Update to 1.52.0.
     new 42490975b3 gnu: r-sva: Update to 3.50.0.
     new 093730584c gnu: r-systempiper: Update to 2.8.0.
     new 61e58cf5a5 gnu: r-topgo: Update to 2.54.0.
     new 5c6e483bdc gnu: r-tximport: Update to 1.30.0.
     new bffc70d0ab gnu: r-variantannotation: Update to 1.48.0.
     new 60c3142ce0 gnu: r-multtest: Update to 2.58.0.
     new a807202129 gnu: r-cghcall: Update to 2.64.0.
     new be650dedb6 gnu: r-motifstack: Update to 1.46.0.
     new 2940a3e7b3 gnu: r-mixomics: Update to 6.26.0.
     new 80bec1ebcd gnu: r-rgreat: Update to 2.4.0.
     new 0bba73cd31 gnu: r-vsn: Update to 3.70.0.
     new 473f5e037e gnu: r-xina: Update to 1.20.0.
     new 2bc3c1d184 gnu: r-xmapbridge: Update to 1.60.0.
     new c32ad52a85 gnu: r-xvector: Update to 0.42.0.
     new f809770f63 gnu: r-zlibbioc: Update to 1.48.0.
     new 94fcd17a9a gnu: r-zellkonverter: Update to 1.12.0.
     new bc75013638 gnu: r-geneplotter: Update to 1.80.0.
     new bb666784c0 gnu: r-oligoclasses: Update to 1.64.0.
     new e0ec1ffea5 gnu: r-oligo: Update to 1.66.0.
     new da119ed981 gnu: r-qfeatures: Update to 1.12.0.
     new 40eae95f8b gnu: r-quantsmooth: Update to 1.68.0.
     new 3fb683d924 gnu: r-qvalue: Update to 2.34.0.
     new 64fa317661 gnu: r-apcomplex: Update to 2.68.0.
     new 4a368a9b94 gnu: r-apeglm: Update to 1.24.0.
     new a9fe1b2b11 gnu: r-greylistchip: Update to 1.34.0.
     new 21ab4d1ca8 gnu: r-diffbind: Update to 3.12.0.
     new e7ea6f9616 gnu: r-mbecs: Update to 1.6.0.
     new cc6484dfc8 gnu: r-mbkmeans: Update to 1.18.0.
     new 71be51278c gnu: r-multibac: Update to 1.12.0.
     new 149588afbf gnu: r-graph: Update to 1.80.0.
     new 884047573e gnu: r-ggtreeextra: Update to 1.12.0.
     new 96165ddb8e gnu: r-pepsnmr: Update to 1.20.0.
     new ac4a0351de gnu: r-chippeakanno: Update to 3.36.0.
     new f5db157c09 gnu: r-matrixgenerics: Update to 1.14.0.
     new 69421a29f7 gnu: r-marray: Update to 1.80.0.
     new dfb7f89353 gnu: r-cghbase: Update to 1.62.0.
     new 584a7748d8 gnu: r-qdnaseq: Update to 1.38.0.
     new ab17c6c3a7 gnu: r-bayseq: Update to 2.36.0.
     new 902bdcb349 gnu: r-chipcomp: Update to 1.32.0.
     new f5d7652b76 gnu: r-riboprofiling: Update to 1.32.0.
     new 798f635742 gnu: r-riboseqr: Update to 1.36.0.
     new 7d58819204 gnu: r-interactionset: Update to 1.30.0.
     new 46e036b3d4 gnu: r-genomicinteractions: Update to 1.36.0.
     new 90c9229ac9 gnu: r-ctc: Update to 1.76.0.
     new 61f3dfbb73 gnu: r-goseq: Update to 1.54.0.
     new 54afcce1c9 gnu: r-glimma: Update to 2.12.0.
     new ec39d7c75d gnu: r-glmgampoi: Update to 1.14.0.
     new 5cb162f10c gnu: r-rots: Update to 1.30.0.
     new fcf2da2b5a gnu: r-plgem: Update to 1.74.0.
     new 6ea406a365 gnu: r-plyranges: Update to 1.22.0.
     new 859c0e244d gnu: r-inspect: Update to 1.31.0.
     new f7455cded8 gnu: r-dnabarcodes: Update to 1.32.0.
     new d1bb8987e8 gnu: r-ruvseq: Update to 1.36.0.
     new eea7381f7b gnu: r-biocneighbors: Update to 1.20.0.
     new 94022ff782 gnu: r-scaledmatrix: Update to 1.10.0.
     new 3a1ab3822b gnu: r-treeio: Update to 1.26.0.
     new 9b01766567 gnu: r-treesummarizedexperiment: Update to 2.10.0.
     new 463884c544 gnu: r-ggtree: Update to 3.10.0.
     new 3f294b6b08 gnu: r-metapod: Update to 1.10.0.
     new 005d9a7bae gnu: r-biocsingular: Update to 1.18.0.
     new e67ac8e887 gnu: r-destiny: Update to 3.16.0.
     new 4e0da209df gnu: r-chipexoqual: Update to 1.26.0.
     new 1dfc7b1a92 gnu: r-dnacopy: Update to 1.76.0.
     new 6078019cc9 gnu: r-ebseq: Update to 2.0.0.
     new 081c2b98e3 gnu: r-karyoploter: Update to 1.28.0.
     new 10a075331e gnu: r-lpsymphony: Update to 1.30.0.
     new e18180c0eb gnu: r-ihw: Update to 1.30.0.
     new 05ae692f27 gnu: r-icobra: Update to 1.30.0.
     new c1b4ee8249 gnu: r-residualmatrix: Update to 1.12.0.
     new 6443a1b62f gnu: r-batchelor: Update to 1.18.0.
     new 983d66f0d5 gnu: r-mast: Update to 1.28.0.
     new d357eb5b85 gnu: r-monocle: Update to 2.30.0.
     new 8dedc34549 gnu: r-sangerseqr: Update to 1.38.0.
     new 15c4eae1a5 gnu: r-noiseq: Update to 2.46.0.
     new b21e5be153 gnu: r-scdd: Update to 1.26.0.
     new f891e73d99 gnu: r-scone: Update to 1.26.0.
     new bc854bbe1c gnu: r-geoquery: Update to 2.70.0.
     new f3f00ebdde gnu: r-illuminaio: Update to 0.44.0.
     new 266e5d631a gnu: r-siggenes: Update to 1.76.0.
     new f2848a9190 gnu: r-bumphunter: Update to 1.44.0.
     new 840a19f6db gnu: r-bumpymatrix: Update to 1.10.0.
     new 7b9d9a5a2e gnu: r-mia: Update to 1.10.0.
     new 25b9295087 gnu: r-microbiome: Update to 1.24.0.
     new 39f73d1d72 gnu: r-milor: Update to 1.10.0.
     new 62f5141691 gnu: r-minfi: Update to 1.48.0.
     new cc2248183a gnu: r-missmethyl: Update to 1.36.0.
     new 64b5a336df gnu: r-methylumi: Update to 2.48.0.
     new 7288117996 gnu: r-lefser: Update to 1.11.5.
     new cce5a25999 gnu: r-lumi: Update to 2.54.0.
     new e7e56ff2c3 gnu: r-linnorm: Update to 2.26.0.
     new 3ad4dd811f gnu: r-ioniser: Update to 2.26.0.
     new 5e0e59d522 gnu: r-tradeseq: Update to 1.16.0.
     new 45a07d3ad9 gnu: r-varianttools: Update to 1.44.0.
     new 5f43898432 gnu: r-heatplus: Update to 3.10.0.
     new 43e2be0e90 gnu: r-gosemsim: Update to 2.28.0.
     new 184985bca3 gnu: r-anota: Update to 1.50.0.
     new 2c2684ffd1 gnu: r-anota2seq: Update to 1.24.0.
     new a68e8cafa7 gnu: r-fcscan: Update to 1.16.0.
     new a4181fd0cd gnu: r-fgsea: Update to 1.28.0.
     new 8bd19e32a8 gnu: r-dose: Update to 3.28.0.
     new 3306a52b0b gnu: r-enrichedheatmap: Update to 1.32.0.
     new e3a2dc27ee gnu: r-enrichplot: Update to 1.22.0.
     new 96864468fb gnu: r-clusterprofiler: Update to 4.10.0.
     new 73795c7ca2 gnu: r-clusterexperiment: Update to 2.22.0.
     new 2f517951a6 gnu: r-mlinterfaces: Update to 1.82.0.
     new 155493d742 gnu: r-annaffy: Update to 1.74.0.
     new 890f6d70e3 gnu: r-a4core: Update to 1.50.0.
     new 9c3a5e588c gnu: r-a4classif: Update to 1.50.0.
     new 282260e898 gnu: r-a4preproc: Update to 1.50.0.
     new 24d37e4036 gnu: r-a4reporting: Update to 1.50.0.
     new 5276c482ea gnu: r-a4base: Update to 1.50.0.
     new c9b9b227f3 gnu: r-a4: Update to 1.50.0.
     new bba4bdcfa8 gnu: r-abseqr: Update to 1.20.0.
     new 1558814d7e gnu: r-bacon: Update to 1.30.0.
     new 61a0a88a0a gnu: r-rgadem: Update to 2.50.0.
     new 242699a168 gnu: r-motifdb: Update to 1.44.0.
     new 50bd666c49 gnu: r-motifbreakr: Update to 2.16.0.
     new 0e52d20f92 gnu: r-genomicscores: Update to 2.14.1.
     new 509f9ebdb5 gnu: r-atacseqqc: Update to 1.26.0.
     new 151d504e61 gnu: r-gofuncr: Update to 1.22.0.
     new 839057a259 gnu: r-annotationtools: Update to 1.76.0.
     new 19e6ce6600 gnu: r-allelicimbalance: Update to 1.40.0.
     new fa36bac2bf gnu: r-aucell: Update to 1.24.0.
     new be1f94fef6 gnu: r-ebimage: Update to 4.44.0.
     new aa19405ad2 gnu: r-yamss: Update to 1.28.0.
     new 874a5b36f7 gnu: r-gtrellis: Update to 1.34.0.
     new 04b787faa9 gnu: r-somaticsignatures: Update to 2.38.0.
     new 1c532887e3 gnu: r-yapsa: Update to 1.28.0.
     new 79cc99851c gnu: r-gcrma: Update to 2.74.0.
     new f725403acc gnu: r-quantro: Update to 1.36.0.
     new 1f06f1bee6 gnu: r-yarn: Update to 1.28.0.
     new f475a679b2 gnu: r-roar: Update to 1.38.0.
     new 4dcee8f24d gnu: r-massspecwavelet: Update to 1.68.0.
     new 88b6c93d9f gnu: r-xcms: Update to 4.0.0.
     new cef30d194d gnu: r-wppi: Update to 1.10.0.
     new dc06db8be4 gnu: r-wrench: Update to 1.20.0.
     new 44710c0375 gnu: r-wiggleplotr: Update to 1.26.0.
     new 8145a1b659 gnu: r-widgettools: Update to 1.80.0.
     new 73c1408024 gnu: r-webbioc: Update to 1.74.0.
     new 799f2b1758 gnu: r-zinbwave: Update to 1.24.0.
     new 8ed77984af gnu: r-zfpkm: Update to 1.24.0.
     new 4b99964591 gnu: r-rbowtie2: Update to 2.8.0.
     new c311d8432e gnu: r-progeny: Update to 1.24.0.
     new 1db614f4a5 gnu: r-arrmnormalization: Update to 1.42.0.
     new c24358d6ca gnu: r-biocfilecache: Update to 2.10.1.
     new f5abe5b135 gnu: r-iclusterplus: Update to 1.38.0.
     new 9b0d62c894 gnu: r-rbowtie: Update to 1.42.0.
     new 99a8f57fea gnu: r-sgseq: Update to 1.36.0.
     new a6b5c44f71 gnu: r-rhisat2: Update to 1.18.0.
     new 0496a1073a gnu: r-quasr: Update to 1.42.1.
     new 68fe07f30c gnu: r-rqc: Update to 1.36.0.
     new 8782870325 gnu: r-birewire: Update to 3.34.0.
     new 742bd0f8a0 gnu: r-multidataset: Update to 1.30.0.
     new 38440f2de1 gnu: r-ropls: Update to 1.34.0.
     new 56bdd86eea gnu: r-biosigner: Update to 1.30.0.
     new 609bf183a5 gnu: r-annotatr: Update to 1.28.0.
     new 86fdc98959 gnu: r-rsubread: Update to 2.16.0.
     new 2a80be7ce6 gnu: r-flowai: Update to 1.32.0.
     new 5320c49bda gnu: r-consensusclusterplus: Update to 1.66.0.
     new 6bbd04de66 gnu: r-cytolib: Update to 2.14.0.
     new 36281bd50f gnu: r-flowcore: Update to 2.14.0.
     new c39735e026 gnu: r-flowmeans: Update to 1.62.0.
     new 751c033fef gnu: r-ncdfflow: Update to 2.48.0.
     new 67679477ba gnu: r-ggcyto: Update to 1.30.0.
     new 366951fdd2 gnu: r-flowviz: Update to 1.66.0.
     new ad2f1fa3e3 gnu: r-flowclust: Update to 3.40.0.
     new 9cab3b7920 gnu: r-rprotobuflib: Update to 2.14.0.
     new e3a31f56ed gnu: r-flowworkspace: Update to 4.14.0.
     new 9e9e18aa25 gnu: r-flowstats: Update to 4.14.0.
     new b949bca6b0 gnu: r-opencyto: Update to 2.14.0.
     new 401b7b12a8 gnu: r-cytoml: Update to 2.14.0.
     new b2f0426950 gnu: r-flowsom: Update to 2.10.0.
     new 79d5e90f66 gnu: r-depecher: Update to 1.18.0.
     new 743813c6f9 gnu: r-chicago: Update to 1.30.0.
     new f7a5604984 gnu: r-cicero: Update to 1.20.0.
     new 454953e13f gnu: r-circrnaprofiler: Update to 1.16.0.
     new c458d5b6ce gnu: r-genie3: Update to 1.24.0.
     new 2510a1044a gnu: r-roc: Update to 1.78.0.
     new 5a8bc97866 gnu: r-watermelon: Update to 2.8.0.
     new 803dd7c34b gnu: r-gdsfmt: Update to 1.38.0.
     new 79872a8711 gnu: r-bigmelon: Update to 1.28.0.
     new 789bf36ee4 gnu: r-seqbias: Update to 1.50.0.
     new 4051e0e886 gnu: r-reqon: Update to 1.48.0.
     new 7d7688dc69 gnu: r-wavcluster: Update to 2.36.0.
     new 3caabfa9cc gnu: r-tilingarray: Update to 1.80.0.
     new 3a13743f97 gnu: r-variantfiltering: Update to 1.38.0.
     new 5bf3e82445 gnu: r-variancepartition: Update to 1.32.1.
     new 4dcbf81e6a gnu: r-htqpcr: Update to 1.56.0.
     new cb985fafa0 gnu: r-ucell: Update to 2.6.1.
     new 6c1acd9c7b gnu: r-unifiedwmwqpcr: Update to 1.38.0.
     new ad680f8bae gnu: r-universalmotif: Update to 1.20.0.
     new f2869d6be9 gnu: r-ace: Update to 1.20.0.
     new d7e259b0f1 gnu: r-acgh: Update to 1.80.0.
     new bf2930fb45 gnu: r-acme: Update to 2.58.0.
     new d340d1217e gnu: r-acde: Update to 1.32.0.
     new 898e7b2998 gnu: r-bgx: Update to 1.68.0.
     new 401c008931 gnu: r-bhc: Update to 1.54.0.
     new 93bcf1310d gnu: r-bicare: Update to 1.60.0.
     new 94a71a0c5c gnu: r-bifet: Update to 1.22.0.
     new 0b4f82dcd0 gnu: r-rsbml: Update to 2.60.0.
     new c991d79eb5 gnu: r-hybridmtest: Update to 1.46.0.
     new 254caa4846 gnu: r-hypergraph: Update to 1.74.0.
     new 7609eb5d5e gnu: r-hyperdraw: Update to 1.54.0.
     new 99ccebc1eb gnu: r-biggr: Update to 1.38.0.
     new 1a8aa0e01c gnu: r-chemmineob: Update to 1.40.0.
     new 363b7835cc gnu: r-chemminer: Update to 3.54.0.
     new 9f89adb1e6 gnu: r-fmcsr: Update to 1.44.0.
     new a3bc318752 gnu: r-bioassayr: Update to 1.40.0.
     new 86ebc4eb8e gnu: r-biobroom: Update to 1.34.0.
     new 117c60be2e gnu: r-graphite: Update to 1.48.0.
     new 86f20313f7 gnu: r-reactomepa: Update to 1.46.0.
     new 6ac66d32ac gnu: r-ebarrays: Update to 2.66.0.
     new 6af6698cfe gnu: r-biocbaseutils: Update to 1.4.0.
     new d7250828e4 gnu: r-bioccheck: Update to 1.38.0.
     new 52672e6ed8 gnu: r-biocgraph: Update to 1.64.0.
     new d7b0a90c09 gnu: r-biocstyle: Update to 2.30.0.
     new ce9897b87a gnu: r-biocviews: Update to 1.70.0.
     new 49c0253941 gnu: r-experimenthub: Update to 2.10.0.
     new 651c714ea8 gnu: r-grohmm: Update to 1.36.0.
     new 539793fd3f gnu: r-multiassayexperiment: Update to 1.28.0.
     new ba32ce636a gnu: r-bioconcotk: Update to 1.22.0.
     new fefdb61862 gnu: r-biocor: Update to 1.26.0.
     new 42df3fb0bc gnu: r-biocpkgtools: Update to 1.20.0.
     new 9891675216 gnu: r-biocset: Update to 1.16.0.
     new 342c4d51e6 gnu: r-biocworkflowtools: Update to 1.28.0.
     new d21faa0b0e gnu: r-biodist: Update to 1.74.0.
     new 769b431e11 gnu: r-pcatools: Update to 2.14.0.
     new 592a7c3a96 gnu: r-m3c: Update to 1.24.0.
     new b3eeb7a577 gnu: r-icens: Update to 1.74.0.
     new d5fdf6818a gnu: r-preprocesscore: Update to 1.64.0.
     new d6064495ba gnu: r-s4arrays: Update to 1.2.0.
     new 1563d1aa58 gnu: r-s4vectors: Update to 0.40.1.
     new c5f7087d97 gnu: r-rgraphviz: Update to 2.46.0.
     new 9e81cc0761 gnu: r-fishpond: Update to 2.8.0.
     new 97e126a6eb gnu: r-fithic: Update to 1.28.0.
     new 6914900d2b gnu: r-hitc: Update to 1.46.0.
     new 9d4cd99b61 gnu: r-hdf5array: Update to 1.30.0.
     new ce6a6e02ce gnu: r-rhdf5lib: Update to 1.24.0.
     new c1a803e972 gnu: r-beachmat: Update to 2.18.0.
     new ab93a3c661 gnu: r-beadarray: Update to 2.52.0.
     new 140cdc13e4 gnu: r-beadarraysnp: Update to 1.68.0.
     new 81ce227c19 gnu: r-beaddatapackr: Update to 1.54.0.
     new 4a16284264 gnu: r-cner: Update to 1.38.0.
     new ba1d5f6442 gnu: r-tfbstools: Update to 1.40.0.
     new 100a9b1018 gnu: r-maftools: Update to 2.18.0.
     new a7636376e2 gnu: r-motifmatchr: Update to 1.24.0.
     new dd7207f736 gnu: r-chromvar: Update to 1.24.0.
     new 15b17cdd76 gnu: r-singlecellexperiment: Update to 1.24.0.
     new acd4cc7d7c gnu: r-singler: Update to 2.4.0.
     new d80937b852 gnu: r-scuttle: Update to 1.12.0.
     new 6c04877d53 gnu: r-scater: Update to 1.30.0.
     new 30ab1bd2f5 gnu: r-scran: Update to 1.30.0.
     new 8609dde1b6 gnu: r-sparsematrixstats: Update to 1.14.0.
     new ce7243dcad gnu: r-spatialexperiment: Update to 1.12.0.
     new 5e2b9b1ee3 gnu: r-delayedmatrixstats: Update to 1.24.0.
     new 657ba5ad20 gnu: r-mscoreutils: Update to 1.14.0.
     new 552604c050 gnu: r-msfeatures: Update to 1.10.0.
     new 47b645bbf9 gnu: r-biocio: Update to 1.12.0.
     new 0afc624d26 gnu: r-msmseda: Update to 1.40.0.
     new 112a6fc671 gnu: r-msmstests: Update to 1.40.0.
     new a74d47616f gnu: r-catalyst: Update to 1.26.0.
     new 320459f58c gnu: r-erma: Update to 1.18.0.
     new 482de12f16 gnu: r-ggbio: Update to 1.50.0.
     new e7fae5732b gnu: r-gviz: Update to 1.46.0.
     new 05d27cc37b gnu: r-gwascat: Update to 2.34.0.
     new 19ea52dcc7 gnu: r-gwastools: Update to 1.48.0.
     new 1489f42459 gnu: r-kegggraph: Update to 1.62.0.
     new 7b53ed98b4 gnu: r-ldblock: Update to 1.32.0.
     new ab5a4cd3ea gnu: r-parody: Update to 1.60.0.
     new 8500da0b55 gnu: r-pathview: Update to 1.42.0.
     new bfc07e1f8d gnu: r-snapcgh: Update to 1.72.0.
     new 1abf46b8d4 gnu: r-snprelate: Update to 1.36.0.
     new c5eb4963a5 gnu: r-snpstats: Update to 1.52.0.
     new 5cc551e02d gnu: r-chromstar: Update to 1.28.0.
     new 02f97e1ee6 gnu: r-guitar: Update to 2.18.0.
     new f08fcf050b gnu: r-ballgown: Update to 2.34.0.
     new 563d25fe34 gnu: r-megadepth: Update to 1.12.0.
     new 36e03fe628 gnu: r-beclear: Update to 2.18.0.
     new b372be99fa gnu: r-bgeecall: Update to 1.18.1.
     new ef44fecd44 gnu: r-bgeedb: Update to 2.28.0.
     new 63fc521edf gnu: r-biobtreer: Update to 1.14.0.
     new d4461eb92c gnu: r-minet: Update to 3.60.0.
     new 52b3dbc77f gnu: r-genetclassifier: Update to 1.42.0.
     new 74293b5ebf gnu: r-dir-expiry: Update to 1.10.0.
     new b6c068e933 gnu: r-basilisk-utils: Update to 1.14.0.
     new 4294719ca8 gnu: r-basilisk: Update to 1.14.0.
     new 85a0c97e52 gnu: r-biocthis: Update to 1.12.0.
     new 9cda66be91 gnu: r-biodb: Update to 1.10.0.
     new 36dfeb59d2 gnu: r-biomformat: Update to 1.30.0.
     new 9ef3d82e79 gnu: r-mvcclass: Update to 1.76.0.
     new 714d7db88a gnu: r-biomvcclass: Update to 1.70.0.
     new 2e6f312638 gnu: r-bionero: Update to 1.10.0.
     new 4649b37d66 gnu: r-bionet: Update to 1.62.0.
     new 3c0ef37db8 gnu: r-bionetstat: Update to 1.22.0.
     new f28a6fe9ef gnu: r-bioqc: Update to 1.30.0.
     new ef306083d9 gnu: r-biotip: Update to 1.16.0.
     new ea524408ac gnu: r-biotmle: Update to 1.26.0.
     new 17e9513de3 gnu: r-bsseq: Update to 1.38.0.
     new 4f188ef8e1 gnu: r-dada2: Update to 1.30.0.
     new 5b60cabe01 gnu: r-dmrseq: Update to 1.22.0.
     new 9b44f15f84 gnu: r-omicade4: Update to 1.42.0.
     new 9b7b4c62ce gnu: r-omnipathr: Update to 3.10.1.
     new eb83f954bc gnu: r-biscuiteer: Update to 1.16.0.
     new fbb62e7d60 gnu: r-tcgabiolinks: Update to 2.30.0.
     new 2179c8ba16 gnu: r-tricycle: Update to 1.10.0.
     new e8d3ad4b73 gnu: r-tximeta: Update to 1.20.0.
     new 3c4bfd969d gnu: r-phyloseq: Update to 1.46.0.

The 531 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails.  The revisions
listed as "add" were already present in the repository and have only
been added to this reference.

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