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branch master updated: gnu: Add r-methylaid.

From: guix-commits
Subject: branch master updated: gnu: Add r-methylaid.
Date: Sat, 04 Nov 2023 06:39:26 -0400

This is an automated email from the git hooks/post-receive script.

rekado pushed a commit to branch master
in repository guix.

The following commit(s) were added to refs/heads/master by this push:
     new 7eeab6417f gnu: Add r-methylaid.
7eeab6417f is described below

commit 7eeab6417f50b35305ec588b9d8e77adaf24f102
Author: Mădălin Ionel Patrașcu <>
AuthorDate: Fri Nov 3 14:51:17 2023 +0100

    gnu: Add r-methylaid.
    * gnu/packages/bioconductor.scm (r-methylaid): New variable.
    Change-Id: I7839035e5316bdbe5f1386b7b41ed2fc440fb432
    Signed-off-by: Ricardo Wurmus <>
 gnu/packages/bioconductor.scm | 38 ++++++++++++++++++++++++++++++++++++++
 1 file changed, 38 insertions(+)

diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index b15a856fb9..8ccc5f49b2 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -8637,6 +8637,44 @@ on the basis that cells of the same type should have 
more similar gene expressio
 profiles than cells of different types.")
     (license license:expat)))
+(define-public r-methylaid
+  (package
+    (name "r-methylaid")
+    (version "1.36.0")
+    (source
+    (origin
+      (method url-fetch)
+      (uri (bioconductor-uri "MethylAid" version))
+      (sha256
+        (base32 "0mzml9j6f7yycf9747ikkpfvxnwji07h8jhwa9a54ix2d0wyxk3d"))))
+    (properties `((upstream-name . "MethylAid")))
+    (build-system r-build-system)
+    (propagated-inputs
+     (list r-biobase
+           r-biocgenerics
+           r-biocparallel
+           r-ggplot2
+           r-gridbase
+           r-hexbin
+           r-matrixstats
+           r-minfi
+           r-rcolorbrewer
+           r-shiny
+           r-summarizedexperiment))
+    (native-inputs (list r-knitr))
+    (home-page "";)
+    (synopsis
+     "Quality control of large Illumina DNA Methylation array data sets")
+    (description
+     "This package provides a visual and interactive web application using
+RStudio's shiny package.  Bad quality samples are detected using 
+and sample-independent controls present on the array and user adjustable
+thresholds.  In depth exploration of bad quality samples can be performed using
+several interactive diagnostic plots of the quality control probes present on
+the array.  Furthermore, the impact of any batch effect provided by the user 
+be explored.")
+    (license license:gpl2+)))
 (define-public r-methylkit
     (name "r-methylkit")

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