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03/13: gnu: Add r-bsgenome-ecoli-ncbi-20080805.


From: guix-commits
Subject: 03/13: gnu: Add r-bsgenome-ecoli-ncbi-20080805.
Date: Mon, 13 Nov 2023 09:10:05 -0500 (EST)

rekado pushed a commit to branch master
in repository guix.

commit 459d9ebd2ad96fb3978ece93ba6ec67917288b69
Author: Mădălin Ionel Patrașcu <madalinionel.patrascu@mdc-berlin.de>
AuthorDate: Mon Nov 6 12:06:39 2023 +0100

    gnu: Add r-bsgenome-ecoli-ncbi-20080805.
    
    * gnu/packages/bioconductor.scm (r-bsgenome-ecoli-ncbi-20080805):
        New variable.
    
    Change-Id: Ic42527fa334be4c23ebe2e19461571d899db77ca
---
 gnu/packages/bioconductor.scm | 22 ++++++++++++++++++++++
 1 file changed, 22 insertions(+)

diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 19c5e7b50b..9196866404 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -543,6 +543,28 @@ Finder (TRF mask).  Only the AGAPS and AMB masks are 
\"active\" by default.")
 as provided by UCSC (danRer11, May 2017) and stored in Biostrings objects.")
     (license license:artistic2.0)))
 
+(define-public r-bsgenome-ecoli-ncbi-20080805
+  (package
+    (name "r-bsgenome-ecoli-ncbi-20080805")
+    (version "1.3.1000")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (bioconductor-uri "BSgenome.Ecoli.NCBI.20080805" version
+                              'annotation))
+       (sha256
+        (base32 "1l7mjyys1kaq4mbia9jamyw6sd0ij1wypwxvwy8aksan3gcfnh27"))))
+    (properties `((upstream-name . "BSgenome.Ecoli.NCBI.20080805")))
+    (build-system r-build-system)
+    (propagated-inputs (list r-bsgenome))
+    (home-page
+     "https://bioconductor.org/packages/BSgenome.Ecoli.NCBI.20080805";)
+    (synopsis "Escherichia coli full genomes")
+    (description
+     "This package provides Escherichia coli full genomes for several strains
+as provided by NCBI on 2008/08/05 and stored in Biostrings objects.")
+    (license license:artistic2.0)))
+
 (define-public r-bsgenome-hsapiens-1000genomes-hs37d5
   (package
     (name "r-bsgenome-hsapiens-1000genomes-hs37d5")



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