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04/13: gnu: Add r-basic4cseq.

From: guix-commits
Subject: 04/13: gnu: Add r-basic4cseq.
Date: Mon, 13 Nov 2023 09:10:05 -0500 (EST)

rekado pushed a commit to branch master
in repository guix.

commit 47a419564976aff55fed898c478ee43b96ab9159
Author: Mădălin Ionel Patrașcu <>
AuthorDate: Mon Nov 6 12:06:40 2023 +0100

    gnu: Add r-basic4cseq.
    * gnu/packages/bioconductor.scm (r-basic4cseq): New variable.
    Change-Id: I8a031dc010590a8ef4655633026c9dfac35213c3
 gnu/packages/bioconductor.scm | 31 +++++++++++++++++++++++++++++++
 1 file changed, 31 insertions(+)

diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 9196866404..303a3a2450 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -22591,6 +22591,37 @@ within a certain time frame are deleted.  This aims to 
reduce disk usage by
 eliminating obsolete caches generated by old versions of packages.")
     (license license:gpl3)))
+(define-public r-basic4cseq
+  (package
+    (name "r-basic4cseq")
+    (version "1.38.0")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (bioconductor-uri "Basic4Cseq" version))
+       (sha256
+        (base32 "1vlrrkg885w77w34m2q8hngr95hhh5bkw9hrzyhnp39igjkcwqx4"))))
+    (properties `((upstream-name . "Basic4Cseq")))
+    (build-system r-build-system)
+    (propagated-inputs
+     (list r-biostrings
+           r-bsgenome-ecoli-ncbi-20080805
+           r-catools
+           r-genomicalignments
+           r-genomicranges
+           r-rcircos))
+    (home-page "";)
+    (synopsis "Analyzing 4C-seq data")
+    (description
+     "Basic4Cseq is an R package for basic filtering, analysis and subsequent
+visualization of @acronym{4C-seq, circular chromosome conformation capture
+sequencing} data.  Virtual fragment libraries can be created for any BSGenome
+package, and filter functions for both reads and fragments and basic quality
+controls are included.  Fragment data in the vicinity of the experiment's
+viewpoint can be visualized as a coverage plot based on a running median
+approach and a multi-scale contact profile.")
+    (license license:lgpl3)))
 (define-public r-basilisk-utils
     (name "r-basilisk-utils")

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