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[bug#32259] [PATCH 2/4] gnu: Add r-refgenome.
From: |
Ricardo Wurmus |
Subject: |
[bug#32259] [PATCH 2/4] gnu: Add r-refgenome. |
Date: |
Tue, 24 Jul 2018 14:22:06 +0200 |
* gnu/packages/cran.scm (r-refgenome): New variable.
---
gnu/packages/cran.scm | 28 ++++++++++++++++++++++++++++
1 file changed, 28 insertions(+)
diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index da9b67bff..693a891a0 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -4678,3 +4678,31 @@ and automatically generate usage notices.")
@item miscellaneous other utilities.
@end itemize")
(license license:gpl2+)))
+
+(define-public r-refgenome
+ (package
+ (name "r-refgenome")
+ (version "1.7.3")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (cran-uri "refGenome" version))
+ (sha256
+ (base32
+ "15p0ra2p1pwhy5ixbhsz1g79c5sc2aap4i4c8kil0m2syg9y45sn"))))
+ (properties `((upstream-name . "refGenome")))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-dbi" ,r-dbi)
+ ("r-doby" ,r-doby)
+ ("r-rsqlite" ,r-rsqlite)))
+ (home-page "https://cran.r-project.org/web/packages/refGenome/")
+ (synopsis
+ "Gene and splice site annotation using annotation data from Ensembl and
UCSC")
+ (description
+ "This package contains functionality for importing and managing of
+downloaded genome annotation data from the Ensembl genome browser (European
+Bioinformatics Institute) and from the UCSC genome browser (University of
+California, Santa Cruz) and annotation routines for genomic positions and
+splice site positions.")
+ (license license:gpl2)))
--
2.18.0