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[bug#32642] [PATCH 13/16] gnu: Add python-pyfaidx.
From: |
Ricardo Wurmus |
Subject: |
[bug#32642] [PATCH 13/16] gnu: Add python-pyfaidx. |
Date: |
Wed, 5 Sep 2018 16:00:03 +0200 |
* gnu/packages/bioinformatics.scm (python-pyfaidx): New variable.
---
gnu/packages/bioinformatics.scm | 22 ++++++++++++++++++++++
1 file changed, 22 insertions(+)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 466e40242..624bae95d 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -13603,3 +13603,25 @@ bound.")
"Pypairix is a Python module for fast querying on a pairix-indexed
bgzipped text file that contains a pair of genomic coordinates per line.")
(license license:expat)))
+
+(define-public python-pyfaidx
+ (package
+ (name "python-pyfaidx")
+ (version "0.5.4.2")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (pypi-uri "pyfaidx" version))
+ (sha256
+ (base32
+ "0y5zyjksj1rdglj601xd2bbni5abhdh622y3ck76chyzxz9z4rx8"))))
+ (build-system python-build-system)
+ (propagated-inputs
+ `(("python-setuptools" ,python-setuptools)
+ ("python-six" ,python-six)))
+ (home-page "http://mattshirley.com")
+ (synopsis "Random access to fasta subsequences")
+ (description
+ "This package provides procedures for efficient pythonic random access to
+fasta subsequences.")
+ (license license:bsd-3)))
--
2.18.0
- [bug#32642] [PATCH 06/16] gnu: Add python-cloudpickle., (continued)
- [bug#32642] [PATCH 06/16] gnu: Add python-cloudpickle., Ricardo Wurmus, 2018/09/05
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- [bug#32642] [PATCH 11/16] gnu: Add python-intervaltree., Ricardo Wurmus, 2018/09/05
- [bug#32642] [PATCH 13/16] gnu: Add python-pyfaidx.,
Ricardo Wurmus <=
- [bug#32642] [PATCH 12/16] gnu: Add python-pypairix., Ricardo Wurmus, 2018/09/05