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[bug#36800] [PATCH 11/11] gnu: Add r-depecher.
From: |
zimoun |
Subject: |
[bug#36800] [PATCH 11/11] gnu: Add r-depecher. |
Date: |
Thu, 25 Jul 2019 11:54:53 +0200 |
Hi Ricardo,
Thank you for your quick feedback.
On Wed, 24 Jul 2019 at 22:50, Ricardo Wurmus <address@hidden> wrote:
>
> zimoun <address@hidden> writes:
>
> > * gnu/packages/bioconductor.scm (r-depecher): New variable.
>
> This package cannot actually be built:
Sorry for the annoyance.
I missed `--pure` when I built the package.
> --8<---------------cut here---------------start------------->8---
> …
> if test -e "/usr/bin/strip" & test -e "/bin/uname" & [[ `uname` == "Linux" ]]
> ; then /usr/bin/strip --strip-debug DepecheR.so; fi
> /gnu/store/q19l04vd2za80mk1845pz7r8cz29qk43-bash-minimal-4.4.23/bin/bash:
> /usr/bin/strip: No such file or directory
> make: *** [Makevars:6: strippedLib] Error 127
> ERROR: compilation failed for package ‘DepecheR’
> * removing
> ‘/gnu/store/pgjzdxwn0nyanx9lvp6i9rxflabh3k21-r-depecher-1.0.3/site-library/DepecheR’
> Backtrace:
> 4 (primitive-load "/gnu/store/f1ky8a22c7s5p053nci05a536j7…")
> In ice-9/eval.scm:
> 191:35 3 (_ #f)
> In srfi/srfi-1.scm:
> 863:16 2 (every1 #<procedure 725d80 at /gnu/store/4p2vk30zhkwxq…> …)
> In
> /gnu/store/4p2vk30zhkwxqdkydn1572qz70jgvl55-module-import/guix/build/gnu-build-system.scm:
> 799:28 1 (_ _)
> In
> /gnu/store/4p2vk30zhkwxqdkydn1572qz70jgvl55-module-import/guix/build/utils.scm:
> 616:6 0 (invoke _ . _)
>
> /gnu/store/4p2vk30zhkwxqdkydn1572qz70jgvl55-module-import/guix/build/utils.scm:616:6:
> In procedure invoke:
> Throw to key `srfi-34' with args `(#<condition &invoke-error [program: "R"
> arguments: ("CMD" "INSTALL" "--install-tests"
> "--library=/gnu/store/pgjzdxwn0nyanx9lvp6i9rxflabh3k21-r-depecher-1.0.3/site-library/"
> "--built-timestamp=1970-01-01" ".") exit-status: 1 term-signal: #f
> stop-signal: #f] 7c4ec0>)'.
> builder for
> `/gnu/store/mwcdvlm6f17i81m16w131042cmvlfh5m-r-depecher-1.0.3.drv' failed
> with exit code 1
> build of /gnu/store/mwcdvlm6f17i81m16w131042cmvlfh5m-r-depecher-1.0.3.drv
> failed
> View build log at
> '/var/log/guix/drvs/mw/cdvlm6f17i81m16w131042cmvlfh5m-r-depecher-1.0.3.drv.bz2'.
> guix build: error: build of
> `/gnu/store/mwcdvlm6f17i81m16w131042cmvlfh5m-r-depecher-1.0.3.drv' failed
> --8<---------------cut here---------------end--------------->8---
>
> I’ll modify the build phases to patch out this call to /usr/bin/strip.
Just to understand, you mean patch the file `DepecheR/src/Makevars` to
remove the absolute path `/usr/bin/strip` to simply `strip`. Right?
All the best,
simon
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- [bug#36793] [PATCH 04/11] gnu: Add r-flowcore., zimoun, 2019/07/24
- [bug#36794] [PATCH 05/11] gnu: Add r-flowutils., zimoun, 2019/07/24
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- [bug#36796] [PATCH 07/11] gnu: Add r-flowmeans., zimoun, 2019/07/24
- [bug#36797] [PATCH 08/11] gnu: Add r-flowpeaks., zimoun, 2019/07/24
- [bug#36798] [PATCH 09/11] gnu: Add r-flowsom., zimoun, 2019/07/24
- [bug#36799] [PATCH 10/11] gnu: Add r-mixomics., zimoun, 2019/07/24
- [bug#36800] [PATCH 11/11] gnu: Add r-depecher., zimoun, 2019/07/24