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[bug#44613] [PATCH] Fix build for bedtools
From: |
Roel Janssen |
Subject: |
[bug#44613] [PATCH] Fix build for bedtools |
Date: |
Fri, 13 Nov 2020 12:01:04 +0100 |
User-agent: |
Evolution 3.38.1 (3.38.1-1.fc33) |
Dear Guix,
By updating samtools to 1.11, I introduced a build failure for
bedtools. More precisely, the tests for intersect break in precisely
this way:
https://github.com/arq5x/bedtools2/issues/814
With the following patches, I'd like to add samtools-1.9, htslib-1.9
(samtools depends on that) to fix this problem with bedtools.
Alternatively we could add a patch to disable the failing bedtools
tests. I manually inspected the test results, and seem to match
perfectly (indicating that there's no problem with bedtools).
Kind regards,
Roel Janssen
0003-gnu-bedtools-Use-samtools-1.9.patch
Description: Text Data
0002-gnu-Add-samtools-1.9.patch
Description: Text Data
0001-gnu-Add-htslib-1.9.patch
Description: Text Data
- [bug#44613] [PATCH] Fix build for bedtools,
Roel Janssen <=